Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC16.19■□□□□ 0.18
Ube4aE9Q735 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC16.19■□□□□ 0.18
Ube4aE9Q735 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Ube4aE9Q735 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Ube4aE9Q735 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC16.19■□□□□ 0.18
Ube4aE9Q735 Gm5850-201ENSMUST00000192923 1206 ntBASIC16.19■□□□□ 0.18
Ube4aE9Q735 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC16.19■□□□□ 0.18
Ube4aE9Q735 Gm9257-201ENSMUST00000221254 232 ntBASIC16.19■□□□□ 0.18
Ube4aE9Q735 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Ube4aE9Q735 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
Ube4aE9Q735 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ube4aE9Q735 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Ube4aE9Q735 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ube4aE9Q735 Gm5421-201ENSMUST00000181698 2354 ntBASIC16.19■□□□□ 0.18
Ube4aE9Q735 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Ube4aE9Q735 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ube4aE9Q735 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ube4aE9Q735 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ube4aE9Q735 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Gm14608-201ENSMUST00000120030 1553 ntBASIC16.18■□□□□ 0.18
Ube4aE9Q735 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Gm37133-201ENSMUST00000192705 1922 ntBASIC16.18■□□□□ 0.18
Ube4aE9Q735 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Ube4aE9Q735 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Gm16479-201ENSMUST00000121706 932 ntBASIC16.18■□□□□ 0.18
Ube4aE9Q735 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Gm6222-202ENSMUST00000182143 629 ntBASIC16.18■□□□□ 0.18
Ube4aE9Q735 Gm27516-201ENSMUST00000184237 98 ntBASIC16.18■□□□□ 0.18
Ube4aE9Q735 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ube4aE9Q735 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Ube4aE9Q735 Gm18244-201ENSMUST00000219747 1566 ntBASIC16.17■□□□□ 0.18
Ube4aE9Q735 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ube4aE9Q735 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Ube4aE9Q735 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ube4aE9Q735 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Ube4aE9Q735 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Ube4aE9Q735 Gm38266-201ENSMUST00000194931 421 ntBASIC16.17■□□□□ 0.18
Ube4aE9Q735 Gm3961-201ENSMUST00000204425 994 ntBASIC16.17■□□□□ 0.18
Ube4aE9Q735 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ube4aE9Q735 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ube4aE9Q735 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC16.17■□□□□ 0.18
Ube4aE9Q735 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ube4aE9Q735 n-R5s195-201ENSMUST00000082891 119 ntBASIC16.17■□□□□ 0.18
Ube4aE9Q735 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Ube4aE9Q735 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Ube4aE9Q735 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ube4aE9Q735 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ube4aE9Q735 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ube4aE9Q735 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Ube4aE9Q735 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ube4aE9Q735 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ube4aE9Q735 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Ube4aE9Q735 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ube4aE9Q735 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ube4aE9Q735 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC16.16■□□□□ 0.18
Ube4aE9Q735 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ube4aE9Q735 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Ube4aE9Q735 Gm11591-201ENSMUST00000120063 702 ntBASIC16.16■□□□□ 0.18
Ube4aE9Q735 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
Ube4aE9Q735 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ube4aE9Q735 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ube4aE9Q735 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ube4aE9Q735 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Ube4aE9Q735 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ube4aE9Q735 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ube4aE9Q735 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Ube4aE9Q735 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ube4aE9Q735 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ube4aE9Q735 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ube4aE9Q735 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ube4aE9Q735 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Ube4aE9Q735 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 47.5 ms