Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim3Q9R1R2 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Gm37844-201ENSMUST00000192473 4097 ntBASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Gm12585-201ENSMUST00000117307 290 ntBASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC12.79□□□□□ -0.36
Trim3Q9R1R2 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC12.79□□□□□ -0.36
Trim3Q9R1R2 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Gm5866-201ENSMUST00000177881 973 ntBASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC12.79□□□□□ -0.36
Trim3Q9R1R2 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC12.79□□□□□ -0.36
Trim3Q9R1R2 AC131690.1-201ENSMUST00000218406 374 ntBASIC12.79□□□□□ -0.36
Trim3Q9R1R2 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Mypopos-202ENSMUST00000205975 2321 ntBASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Gm13127-201ENSMUST00000118978 1389 ntBASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim3Q9R1R2 Gm3365-201ENSMUST00000216296 1480 ntBASIC12.78□□□□□ -0.36
Trim3Q9R1R2 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Gm15393-201ENSMUST00000120499 219 ntBASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 AC153872.1-201ENSMUST00000199539 128 ntBASIC12.78□□□□□ -0.36
Trim3Q9R1R2 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Gm2423-201ENSMUST00000074863 733 ntBASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Gm44065-201ENSMUST00000203184 3527 ntBASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim3Q9R1R2 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC12.77□□□□□ -0.36
Trim3Q9R1R2 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trim3Q9R1R2 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Trim3Q9R1R2 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trim3Q9R1R2 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trim3Q9R1R2 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trim3Q9R1R2 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC12.77□□□□□ -0.36
Trim3Q9R1R2 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Trim3Q9R1R2 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trim3Q9R1R2 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Gm18027-201ENSMUST00000218947 619 ntBASIC12.77□□□□□ -0.37
Trim3Q9R1R2 AC124732.1-201ENSMUST00000221551 910 ntBASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Gm20445-201ENSMUST00000061905 565 ntBASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms