Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Mir6977-201ENSMUST00000184960 64 ntBASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Gm4971-201ENSMUST00000205991 1108 ntBASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Prpf40aQ9R1C7 AC154262.2-201ENSMUST00000224310 2293 ntBASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Gm31048-201ENSMUST00000196103 1061 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Gm18905-201ENSMUST00000205454 928 ntBASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 AC125206.2-201ENSMUST00000217454 574 ntBASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 AC132260.2-201ENSMUST00000224482 344 ntBASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Prpf40aQ9R1C7 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 AC139054.1-201ENSMUST00000226898 1598 ntBASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Gm15240-201ENSMUST00000118156 720 ntBASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Gm7730-201ENSMUST00000212486 454 ntBASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Prpf40aQ9R1C7 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms