Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Vps28Q9D1C8 Gm15889-202ENSMUST00000212669 2443 ntBASIC13.91□□□□□ -0.18
Vps28Q9D1C8 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Vps28Q9D1C8 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
Vps28Q9D1C8 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Vps28Q9D1C8 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Vps28Q9D1C8 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Gm12416-201ENSMUST00000120911 1008 ntBASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 AC131997.1-201ENSMUST00000228611 1229 ntBASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Ankra2-208ENSMUST00000226100 1476 ntBASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Gm9947-201ENSMUST00000067599 2920 ntBASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Vps28Q9D1C8 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC13.9□□□□□ -0.19
Vps28Q9D1C8 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Gm7446-201ENSMUST00000221035 1240 ntBASIC13.89□□□□□ -0.19
Vps28Q9D1C8 AC192088.1-201ENSMUST00000227561 301 ntBASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Pcgf5-211ENSMUST00000225920 6443 ntBASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Vps28Q9D1C8 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Gm21038-201ENSMUST00000222205 1383 ntBASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Gm15770-201ENSMUST00000117498 584 ntBASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Gm15678-201ENSMUST00000117573 960 ntBASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Gm27701-201ENSMUST00000184498 110 ntBASIC13.88□□□□□ -0.19
Vps28Q9D1C8 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms