Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Mir7085-201ENSMUST00000184353 66 ntBASIC13.21□□□□□ -0.29
Ubfd1Q78JW9 Gm43438-201ENSMUST00000198133 379 ntBASIC13.21□□□□□ -0.29
Ubfd1Q78JW9 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ubfd1Q78JW9 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ubfd1Q78JW9 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ubfd1Q78JW9 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ubfd1Q78JW9 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ubfd1Q78JW9 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Ubfd1Q78JW9 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ubfd1Q78JW9 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ubfd1Q78JW9 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ubfd1Q78JW9 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ubfd1Q78JW9 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ubfd1Q78JW9 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ubfd1Q78JW9 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ubfd1Q78JW9 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ubfd1Q78JW9 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC13.21□□□□□ -0.3
Ubfd1Q78JW9 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ubfd1Q78JW9 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC13.21□□□□□ -0.3
Ubfd1Q78JW9 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ubfd1Q78JW9 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Gm38577-201ENSMUST00000221531 4545 ntBASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Gm8213-201ENSMUST00000118191 441 ntBASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Gm42442-201ENSMUST00000197951 1133 ntBASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ubfd1Q78JW9 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Nupl1-207ENSMUST00000225311 2475 ntBASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 AY702102-202ENSMUST00000194651 1173 ntBASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Gm37019-201ENSMUST00000192133 2134 ntBASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ubfd1Q78JW9 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 72.9 ms