Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Gm44492-201ENSMUST00000197012 141 ntBASIC12.71□□□□□ -0.37
Trim40Q3UWA4 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 AC174742.1-201ENSMUST00000218272 304 ntBASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC12.71□□□□□ -0.38
Trim40Q3UWA4 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trim40Q3UWA4 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Trim40Q3UWA4 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trim40Q3UWA4 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trim40Q3UWA4 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trim40Q3UWA4 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trim40Q3UWA4 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trim40Q3UWA4 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trim40Q3UWA4 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trim40Q3UWA4 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Trim40Q3UWA4 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trim40Q3UWA4 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Gm9727-201ENSMUST00000161387 555 ntBASIC12.7□□□□□ -0.38
Trim40Q3UWA4 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim40Q3UWA4 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Gm12892-201ENSMUST00000117367 1146 ntBASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Rpph1-201ENSMUST00000175096 319 ntBASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Mir8117-201ENSMUST00000184773 107 ntBASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Gm44945-201ENSMUST00000206764 1187 ntBASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 CT030684.1-201ENSMUST00000227292 914 ntBASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Gm45751-201ENSMUST00000210185 1573 ntBASIC12.69□□□□□ -0.38
Trim40Q3UWA4 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim40Q3UWA4 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC12.68□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 62.4 ms