Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Gm37500-201ENSMUST00000192059 1443 ntBASIC14.13□□□□□ -0.15
Rnf40Q3U319 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Gm13294-201ENSMUST00000121757 1330 ntBASIC14.13□□□□□ -0.15
Rnf40Q3U319 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Zfp125-201ENSMUST00000079237 2488 ntBASIC14.13□□□□□ -0.15
Rnf40Q3U319 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Gm37269-201ENSMUST00000193906 1891 ntBASIC14.12□□□□□ -0.15
Rnf40Q3U319 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Gm26871-204ENSMUST00000181310 523 ntTSL 3 BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Gm28722-201ENSMUST00000187630 1036 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC14.12□□□□□ -0.15
Rnf40Q3U319 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf40Q3U319 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Gm13233-201ENSMUST00000118760 1443 ntBASIC14.11□□□□□ -0.15
Rnf40Q3U319 Gm13244-201ENSMUST00000118855 1446 ntBASIC14.11□□□□□ -0.15
Rnf40Q3U319 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC14.11□□□□□ -0.15
Rnf40Q3U319 1700041M19Rik-202ENSMUST00000190908 1123 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Gm37293-201ENSMUST00000191658 295 ntBASIC14.11□□□□□ -0.15
Rnf40Q3U319 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 CT009754.4-201ENSMUST00000221430 565 ntBASIC14.11□□□□□ -0.15
Rnf40Q3U319 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 AC137842.1-201ENSMUST00000227896 2064 ntBASIC14.11□□□□□ -0.15
Rnf40Q3U319 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms