Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Usp4P35123 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Usp4P35123 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC14.23□□□□□ -0.13
Usp4P35123 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Usp4P35123 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 Gm29310-201ENSMUST00000185468 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm21825-201ENSMUST00000185728 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm29109-201ENSMUST00000185895 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm21896-201ENSMUST00000186520 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm21873-201ENSMUST00000186728 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm21794-201ENSMUST00000187056 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm21880-201ENSMUST00000187275 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm21826-201ENSMUST00000187451 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm21198-201ENSMUST00000188393 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm21749-201ENSMUST00000189343 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm21901-201ENSMUST00000189568 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm29424-201ENSMUST00000189716 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm28599-201ENSMUST00000189838 694 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm21867-201ENSMUST00000189917 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm29269-201ENSMUST00000190087 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm21722-201ENSMUST00000190153 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm28423-201ENSMUST00000190701 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm21899-201ENSMUST00000190745 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm21910-201ENSMUST00000191163 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm21849-201ENSMUST00000191571 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm28678-201ENSMUST00000191593 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm20910-201ENSMUST00000193268 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 Gm21871-201ENSMUST00000194621 696 ntBASIC14.23□□□□□ -0.13
Usp4P35123 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC14.23□□□□□ -0.13
Usp4P35123 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC14.23□□□□□ -0.13
Usp4P35123 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp4P35123 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC14.23□□□□□ -0.13
Usp4P35123 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC14.23□□□□□ -0.13
Usp4P35123 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp4P35123 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp4P35123 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp4P35123 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC14.22□□□□□ -0.13
Usp4P35123 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC14.22□□□□□ -0.13
Usp4P35123 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usp4P35123 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usp4P35123 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp4P35123 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp4P35123 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC14.22□□□□□ -0.13
Usp4P35123 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp4P35123 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
Usp4P35123 Gm13453-201ENSMUST00000118708 357 ntBASIC14.22□□□□□ -0.13
Usp4P35123 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC14.22□□□□□ -0.13
Usp4P35123 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC14.22□□□□□ -0.13
Usp4P35123 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC14.22□□□□□ -0.13
Usp4P35123 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC14.22□□□□□ -0.13
Usp4P35123 Gm25144-201ENSMUST00000179561 110 ntBASIC14.22□□□□□ -0.13
Usp4P35123 Gm25352-201ENSMUST00000179815 110 ntBASIC14.22□□□□□ -0.13
Usp4P35123 Gm27618-201ENSMUST00000183671 60 ntBASIC14.22□□□□□ -0.13
Usp4P35123 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC14.22□□□□□ -0.13
Usp4P35123 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC14.22□□□□□ -0.13
Usp4P35123 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usp4P35123 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Usp4P35123 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp4P35123 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp4P35123 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Usp4P35123 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp4P35123 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp4P35123 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp4P35123 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp4P35123 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp4P35123 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC14.22□□□□□ -0.13
Usp4P35123 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp4P35123 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp4P35123 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
Usp4P35123 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp4P35123 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp4P35123 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Usp4P35123 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp4P35123 Gm43134-201ENSMUST00000199434 1886 ntBASIC14.21□□□□□ -0.13
Usp4P35123 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp4P35123 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Usp4P35123 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp4P35123 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC14.21□□□□□ -0.13
Usp4P35123 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC14.21□□□□□ -0.13
Usp4P35123 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Usp4P35123 Gm37277-201ENSMUST00000194052 1111 ntBASIC14.21□□□□□ -0.13
Usp4P35123 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC14.21□□□□□ -0.13
Usp4P35123 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 48.1 ms