Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC12.94□□□□□ -0.34
Msx1P13297 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC12.94□□□□□ -0.34
Msx1P13297 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC12.94□□□□□ -0.34
Msx1P13297 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Msx1P13297 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Msx1P13297 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC12.94□□□□□ -0.34
Msx1P13297 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Msx1P13297 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC12.94□□□□□ -0.34
Msx1P13297 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Msx1P13297 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Gm18027-201ENSMUST00000218947 619 ntBASIC12.94□□□□□ -0.34
Msx1P13297 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Rpp30-201ENSMUST00000025714 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC12.94□□□□□ -0.34
Msx1P13297 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC12.93□□□□□ -0.34
Msx1P13297 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC12.93□□□□□ -0.34
Msx1P13297 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Msx1P13297 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC12.93□□□□□ -0.34
Msx1P13297 Gm13392-201ENSMUST00000117708 150 ntBASIC12.93□□□□□ -0.34
Msx1P13297 Gm13226-201ENSMUST00000117838 404 ntBASIC12.93□□□□□ -0.34
Msx1P13297 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC12.93□□□□□ -0.34
Msx1P13297 Gm15875-201ENSMUST00000152264 273 ntTSL 3 BASIC12.93□□□□□ -0.34
Msx1P13297 Snora78-201ENSMUST00000158630 128 ntBASIC12.93□□□□□ -0.34
Msx1P13297 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC12.93□□□□□ -0.34
Msx1P13297 Gm17420-201ENSMUST00000164753 153 ntBASIC12.93□□□□□ -0.34
Msx1P13297 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC12.93□□□□□ -0.34
Msx1P13297 A330048O09Rik-201ENSMUST00000180777 672 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC12.93□□□□□ -0.34
Msx1P13297 CT030704.2-201ENSMUST00000228887 494 ntBASIC12.93□□□□□ -0.34
Msx1P13297 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Tcf21-201ENSMUST00000049930 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Msx1P13297 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Msx1P13297 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
Msx1P13297 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msx1P13297 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
Msx1P13297 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC12.92□□□□□ -0.34
Msx1P13297 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Mir1247-201ENSMUST00000116706 82 ntBASIC12.92□□□□□ -0.34
Msx1P13297 Gm8062-201ENSMUST00000139696 444 ntBASIC12.92□□□□□ -0.34
Msx1P13297 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
Msx1P13297 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Msx1P13297 9430065F17Rik-202ENSMUST00000180908 1084 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Gm27486-201ENSMUST00000184923 80 ntBASIC12.92□□□□□ -0.34
Msx1P13297 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC12.92□□□□□ -0.34
Msx1P13297 Gm37714-201ENSMUST00000194742 342 ntBASIC12.92□□□□□ -0.34
Msx1P13297 Gm42693-201ENSMUST00000196779 631 ntBASIC12.92□□□□□ -0.34
Msx1P13297 Gm43084-201ENSMUST00000200696 947 ntBASIC12.92□□□□□ -0.34
Msx1P13297 Gm7067-201ENSMUST00000207698 1249 ntBASIC12.92□□□□□ -0.34
Msx1P13297 Gm9520-201ENSMUST00000209460 1253 ntBASIC12.92□□□□□ -0.34
Msx1P13297 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC12.92□□□□□ -0.34
Msx1P13297 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Msx1P13297 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC12.92□□□□□ -0.34
Msx1P13297 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 50.6 ms