Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lmx1bO88609 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lmx1bO88609 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lmx1bO88609 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lmx1bO88609 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
Lmx1bO88609 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lmx1bO88609 Gm13689-201ENSMUST00000119360 685 ntBASIC12.3□□□□□ -0.44
Lmx1bO88609 Gm12485-201ENSMUST00000119641 291 ntBASIC12.3□□□□□ -0.44
Lmx1bO88609 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
Lmx1bO88609 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC12.3□□□□□ -0.44
Lmx1bO88609 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC12.3□□□□□ -0.44
Lmx1bO88609 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC12.3□□□□□ -0.44
Lmx1bO88609 Gm3809-201ENSMUST00000180973 1006 ntBASIC12.3□□□□□ -0.44
Lmx1bO88609 Gm27892-201ENSMUST00000185017 106 ntBASIC12.3□□□□□ -0.44
Lmx1bO88609 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC12.3□□□□□ -0.44
Lmx1bO88609 Gm5069-202ENSMUST00000192714 1011 ntBASIC12.3□□□□□ -0.44
Lmx1bO88609 Gm4971-201ENSMUST00000205991 1108 ntBASIC12.3□□□□□ -0.44
Lmx1bO88609 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lmx1bO88609 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Lmx1bO88609 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lmx1bO88609 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lmx1bO88609 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Lmx1bO88609 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lmx1bO88609 Gm12626-201ENSMUST00000117339 1983 ntBASIC12.3□□□□□ -0.44
Lmx1bO88609 Gm12623-201ENSMUST00000119849 1983 ntBASIC12.3□□□□□ -0.44
Lmx1bO88609 Gm42872-201ENSMUST00000200026 1967 ntBASIC12.3□□□□□ -0.44
Lmx1bO88609 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lmx1bO88609 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lmx1bO88609 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Lmx1bO88609 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lmx1bO88609 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lmx1bO88609 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lmx1bO88609 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lmx1bO88609 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lmx1bO88609 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lmx1bO88609 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC12.29□□□□□ -0.44
Lmx1bO88609 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Gm42769-201ENSMUST00000198576 1659 ntBASIC12.29□□□□□ -0.44
Lmx1bO88609 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Lmx1bO88609 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Lmx1bO88609 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Lmx1bO88609 AC161252.3-201ENSMUST00000225465 1549 ntBASIC12.29□□□□□ -0.44
Lmx1bO88609 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Gm5303-201ENSMUST00000117943 1252 ntBASIC12.29□□□□□ -0.44
Lmx1bO88609 Gm15824-201ENSMUST00000119516 955 ntBASIC12.29□□□□□ -0.44
Lmx1bO88609 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Gm12416-201ENSMUST00000120911 1008 ntBASIC12.29□□□□□ -0.44
Lmx1bO88609 Gm14730-201ENSMUST00000122378 1045 ntBASIC12.29□□□□□ -0.44
Lmx1bO88609 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC12.29□□□□□ -0.44
Lmx1bO88609 Gm15429-201ENSMUST00000151268 798 ntBASIC12.29□□□□□ -0.44
Lmx1bO88609 Gm26464-201ENSMUST00000157094 305 ntBASIC12.29□□□□□ -0.44
Lmx1bO88609 Gm6244-201ENSMUST00000178732 841 ntBASIC12.29□□□□□ -0.44
Lmx1bO88609 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC12.29□□□□□ -0.44
Lmx1bO88609 Gm7498-201ENSMUST00000203282 1084 ntBASIC12.29□□□□□ -0.44
Lmx1bO88609 Gm7067-201ENSMUST00000207698 1249 ntBASIC12.29□□□□□ -0.44
Lmx1bO88609 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Lmx1bO88609 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Gm21038-201ENSMUST00000222205 1383 ntBASIC12.29□□□□□ -0.44
Lmx1bO88609 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Lmx1bO88609 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lmx1bO88609 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC12.28□□□□□ -0.44
Lmx1bO88609 Gm12020-201ENSMUST00000119030 2042 ntBASIC12.28□□□□□ -0.44
Lmx1bO88609 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC12.28□□□□□ -0.44
Lmx1bO88609 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Lmx1bO88609 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC12.28□□□□□ -0.44
Lmx1bO88609 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms