Protein–RNA interactions for Protein: Q91Y16

Pcdha3, Protocadherin alpha 3, mousemouse

Predictions only

Length 942 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha3Q91Y16 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Gtpbp10-211ENSMUST00000198799 648 ntBASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Gm44719-201ENSMUST00000206404 149 ntBASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Pcdha3Q91Y16 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Gm38346-201ENSMUST00000192379 2639 ntBASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 AL593843.1-201ENSMUST00000195891 145 ntBASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Gm5279-201ENSMUST00000199575 745 ntBASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 AC154687.2-201ENSMUST00000223853 640 ntBASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdha3Q91Y16 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Pcdha3Q91Y16 Gm38094-201ENSMUST00000195864 2978 ntBASIC14.21□□□□□ -0.14
Pcdha3Q91Y16 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Pcdha3Q91Y16 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Pcdha3Q91Y16 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Pcdha3Q91Y16 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdha3Q91Y16 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms