Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Gm5069-202ENSMUST00000192714 1011 ntBASIC16.4■□□□□ 0.22
Brf1Q8CFK2 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Gm19220-201ENSMUST00000222682 803 ntBASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.22
Brf1Q8CFK2 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Gm12341-201ENSMUST00000119724 503 ntBASIC16.39■□□□□ 0.21
Brf1Q8CFK2 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Gm37917-201ENSMUST00000194711 392 ntBASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Gm17330-201ENSMUST00000221047 165 ntBASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Gm5161-201ENSMUST00000075243 853 ntBASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Gm24447-201ENSMUST00000083977 338 ntBASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC16.39■□□□□ 0.21
Brf1Q8CFK2 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Gm12537-201ENSMUST00000119266 1002 ntBASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Gm12070-201ENSMUST00000119551 1002 ntBASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Gm12671-201ENSMUST00000119978 1002 ntBASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Gm13292-201ENSMUST00000120014 1000 ntBASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Gm12403-201ENSMUST00000121384 959 ntBASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Gm10359-201ENSMUST00000180167 1002 ntBASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Gm12033-201ENSMUST00000180654 1002 ntBASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Gm5559-201ENSMUST00000180755 1002 ntBASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Gm4335-201ENSMUST00000182581 1004 ntBASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Ksr1-207ENSMUST00000226282 5260 ntBASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
Brf1Q8CFK2 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 AC154725.1-201ENSMUST00000224826 1961 ntBASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Gm18624-201ENSMUST00000220966 658 ntBASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms