Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Mir8109-201ENSMUST00000184375 117 ntBASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Gm28182-201ENSMUST00000188354 2477 ntBASIC18.54■□□□□ 0.56
Usp40Q8BWR4 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Gm43118-201ENSMUST00000199149 775 ntBASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Gm45930-201ENSMUST00000221330 292 ntBASIC18.53■□□□□ 0.56
Usp40Q8BWR4 AC133598.1-201ENSMUST00000224327 660 ntBASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Usp40Q8BWR4 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC18.52■□□□□ 0.56
Usp40Q8BWR4 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Usp40Q8BWR4 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Usp40Q8BWR4 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC18.52■□□□□ 0.56
Usp40Q8BWR4 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Usp40Q8BWR4 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Usp40Q8BWR4 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Usp40Q8BWR4 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Usp40Q8BWR4 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC18.52■□□□□ 0.56
Usp40Q8BWR4 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC18.52■□□□□ 0.56
Usp40Q8BWR4 Gm16202-201ENSMUST00000117532 544 ntBASIC18.52■□□□□ 0.56
Usp40Q8BWR4 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC18.52■□□□□ 0.56
Usp40Q8BWR4 AC134254.1-201ENSMUST00000221362 167 ntBASIC18.52■□□□□ 0.56
Usp40Q8BWR4 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Usp40Q8BWR4 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Usp40Q8BWR4 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Usp40Q8BWR4 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Usp40Q8BWR4 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Usp40Q8BWR4 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Usp40Q8BWR4 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC18.52■□□□□ 0.55
Usp40Q8BWR4 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC18.52■□□□□ 0.55
Usp40Q8BWR4 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Usp40Q8BWR4 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Usp40Q8BWR4 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Gm25927-201ENSMUST00000175058 117 ntBASIC18.51■□□□□ 0.55
Usp40Q8BWR4 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms