Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Gm5320-201ENSMUST00000207163 1519 ntBASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sh3rf1Q69ZI1 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Gm7899-201ENSMUST00000192935 1897 ntBASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Gm46209-201ENSMUST00000217912 553 ntBASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Gm10729-202ENSMUST00000193403 1375 ntBASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Ankra2-208ENSMUST00000226100 1476 ntBASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Gm45242-201ENSMUST00000210666 2129 ntBASIC13.78□□□□□ -0.2
Sh3rf1Q69ZI1 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Sh3rf1Q69ZI1 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
Sh3rf1Q69ZI1 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.2
Sh3rf1Q69ZI1 AC117194.1-201ENSMUST00000224847 3002 ntBASIC13.77□□□□□ -0.2
Sh3rf1Q69ZI1 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
Sh3rf1Q69ZI1 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
Sh3rf1Q69ZI1 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Sh3rf1Q69ZI1 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
Sh3rf1Q69ZI1 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Sh3rf1Q69ZI1 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.2
Sh3rf1Q69ZI1 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Sh3rf1Q69ZI1 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Sh3rf1Q69ZI1 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Sh3rf1Q69ZI1 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Sh3rf1Q69ZI1 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC13.77□□□□□ -0.21
Sh3rf1Q69ZI1 Gm6222-201ENSMUST00000120787 396 ntBASIC13.77□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms