Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Six4Q61321 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
Six4Q61321 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Six4Q61321 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Six4Q61321 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Six4Q61321 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Six4Q61321 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Six4Q61321 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
Six4Q61321 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC13.7□□□□□ -0.22
Six4Q61321 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Gm43273-201ENSMUST00000199649 2594 ntBASIC13.7□□□□□ -0.22
Six4Q61321 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Six4Q61321 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC13.7□□□□□ -0.22
Six4Q61321 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC13.7□□□□□ -0.22
Six4Q61321 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC13.7□□□□□ -0.22
Six4Q61321 Gm18018-201ENSMUST00000198273 408 ntBASIC13.7□□□□□ -0.22
Six4Q61321 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC13.7□□□□□ -0.22
Six4Q61321 AC154595.3-201ENSMUST00000224579 384 ntBASIC13.7□□□□□ -0.22
Six4Q61321 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Six4Q61321 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
Six4Q61321 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC13.7□□□□□ -0.22
Six4Q61321 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
Six4Q61321 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC13.7□□□□□ -0.22
Six4Q61321 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Six4Q61321 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Six4Q61321 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Six4Q61321 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC13.69□□□□□ -0.22
Six4Q61321 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Gm28386-201ENSMUST00000189147 1849 ntBASIC13.69□□□□□ -0.22
Six4Q61321 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Six4Q61321 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Six4Q61321 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC13.69□□□□□ -0.22
Six4Q61321 Gm12091-201ENSMUST00000146791 830 ntBASIC13.69□□□□□ -0.22
Six4Q61321 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 AC073947.2-201ENSMUST00000215888 1130 ntBASIC13.69□□□□□ -0.22
Six4Q61321 AC162801.1-201ENSMUST00000220612 198 ntBASIC13.69□□□□□ -0.22
Six4Q61321 Gm7446-201ENSMUST00000221035 1240 ntBASIC13.69□□□□□ -0.22
Six4Q61321 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Six4Q61321 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC13.69□□□□□ -0.22
Six4Q61321 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Six4Q61321 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Six4Q61321 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Six4Q61321 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
Six4Q61321 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC13.68□□□□□ -0.22
Six4Q61321 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Six4Q61321 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC13.68□□□□□ -0.22
Six4Q61321 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Six4Q61321 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Six4Q61321 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC13.68□□□□□ -0.22
Six4Q61321 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Six4Q61321 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC13.68□□□□□ -0.22
Six4Q61321 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Six4Q61321 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Six4Q61321 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Six4Q61321 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Six4Q61321 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
Six4Q61321 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms