Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Gm15678-201ENSMUST00000117573 960 ntBASIC17.2■□□□□ 0.34
Trim58Q5NCC9 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC17.2■□□□□ 0.34
Trim58Q5NCC9 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim58Q5NCC9 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC17.2■□□□□ 0.34
Trim58Q5NCC9 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim58Q5NCC9 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC17.2■□□□□ 0.34
Trim58Q5NCC9 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC17.2■□□□□ 0.34
Trim58Q5NCC9 Gm17330-201ENSMUST00000221047 165 ntBASIC17.2■□□□□ 0.34
Trim58Q5NCC9 AC139580.1-202ENSMUST00000223574 928 ntBASIC17.2■□□□□ 0.34
Trim58Q5NCC9 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim58Q5NCC9 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Trim58Q5NCC9 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim58Q5NCC9 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
Trim58Q5NCC9 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim58Q5NCC9 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim58Q5NCC9 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim58Q5NCC9 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Trim58Q5NCC9 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim58Q5NCC9 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim58Q5NCC9 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim58Q5NCC9 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Gm7899-201ENSMUST00000192935 1897 ntBASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Gm24694-201ENSMUST00000180054 110 ntBASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Gm27663-201ENSMUST00000184839 110 ntBASIC17.19■□□□□ 0.34
Trim58Q5NCC9 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 AC159114.1-201ENSMUST00000220349 266 ntBASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Gm24447-201ENSMUST00000083977 338 ntBASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim58Q5NCC9 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Gm42928-201ENSMUST00000197338 3339 ntBASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Gm15321-201ENSMUST00000121290 288 ntBASIC17.18■□□□□ 0.34
Trim58Q5NCC9 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Hist1h2al-201ENSMUST00000091708 339 ntBASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Gm44891-201ENSMUST00000208817 2223 ntBASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
Trim58Q5NCC9 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trim58Q5NCC9 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Gm12537-201ENSMUST00000119266 1002 ntBASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Gm12070-201ENSMUST00000119551 1002 ntBASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Gm12671-201ENSMUST00000119978 1002 ntBASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Gm13292-201ENSMUST00000120014 1000 ntBASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Gm12403-201ENSMUST00000121384 959 ntBASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Gm10359-201ENSMUST00000180167 1002 ntBASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Gm12033-201ENSMUST00000180654 1002 ntBASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Gm5559-201ENSMUST00000180755 1002 ntBASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Gm4335-201ENSMUST00000182581 1004 ntBASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Gm9797-201ENSMUST00000052902 613 ntBASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
Trim58Q5NCC9 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 77.4 ms