Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Gm11524-201ENSMUST00000119349 807 ntBASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Gm12485-201ENSMUST00000119641 291 ntBASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3bQ3ULL6 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 AC154527.2-201ENSMUST00000225256 1466 ntBASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Gm37917-201ENSMUST00000194711 392 ntBASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3bQ3ULL6 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
Upf3bQ3ULL6 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Upf3bQ3ULL6 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Upf3bQ3ULL6 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Upf3bQ3ULL6 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Upf3bQ3ULL6 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Upf3bQ3ULL6 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Upf3bQ3ULL6 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Upf3bQ3ULL6 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Upf3bQ3ULL6 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Upf3bQ3ULL6 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
Upf3bQ3ULL6 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
Upf3bQ3ULL6 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Upf3bQ3ULL6 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Upf3bQ3ULL6 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Upf3bQ3ULL6 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Upf3bQ3ULL6 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 56.6 ms