Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Rnf40Q3U319 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Rnf40Q3U319 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Gm13418-201ENSMUST00000119097 944 ntBASIC14.15□□□□□ -0.14
Rnf40Q3U319 Olfr1397-ps1-201ENSMUST00000121388 962 ntBASIC14.15□□□□□ -0.14
Rnf40Q3U319 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Gm16026-204ENSMUST00000162652 683 ntBASIC14.15□□□□□ -0.14
Rnf40Q3U319 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Otx2os1-206ENSMUST00000228153 787 ntBASIC14.15□□□□□ -0.14
Rnf40Q3U319 CT030704.2-201ENSMUST00000228887 494 ntBASIC14.15□□□□□ -0.14
Rnf40Q3U319 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC14.14□□□□□ -0.15
Rnf40Q3U319 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Gm5479-201ENSMUST00000160578 435 ntBASIC14.14□□□□□ -0.15
Rnf40Q3U319 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Speer4f2-201ENSMUST00000166086 1278 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC14.14□□□□□ -0.15
Rnf40Q3U319 2900064F13Rik-201ENSMUST00000202166 1008 ntBASIC14.14□□□□□ -0.15
Rnf40Q3U319 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Gm37660-201ENSMUST00000192754 1732 ntBASIC14.14□□□□□ -0.15
Rnf40Q3U319 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Matn2-203ENSMUST00000226766 3252 ntBASIC14.14□□□□□ -0.15
Rnf40Q3U319 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Gm5366-201ENSMUST00000215494 1338 ntBASIC14.14□□□□□ -0.15
Rnf40Q3U319 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf40Q3U319 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Gm43061-201ENSMUST00000198850 2241 ntBASIC14.13□□□□□ -0.15
Rnf40Q3U319 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Gm12882-201ENSMUST00000121696 517 ntBASIC14.13□□□□□ -0.15
Rnf40Q3U319 Gm12895-201ENSMUST00000122214 226 ntBASIC14.13□□□□□ -0.15
Rnf40Q3U319 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Gm18595-201ENSMUST00000175736 1068 ntBASIC14.13□□□□□ -0.15
Rnf40Q3U319 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Gm38170-201ENSMUST00000195404 816 ntBASIC14.13□□□□□ -0.15
Rnf40Q3U319 Gm6089-201ENSMUST00000197666 938 ntBASIC14.13□□□□□ -0.15
Rnf40Q3U319 Gm13830-205ENSMUST00000201195 1155 ntBASIC14.13□□□□□ -0.15
Rnf40Q3U319 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC14.13□□□□□ -0.15
Rnf40Q3U319 Gm45167-201ENSMUST00000208007 322 ntBASIC14.13□□□□□ -0.15
Rnf40Q3U319 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms