Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC11.15□□□□□ -0.62
Trim63Q38HM4 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
Trim63Q38HM4 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
Trim63Q38HM4 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim63Q38HM4 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim63Q38HM4 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim63Q38HM4 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim63Q38HM4 Adamts9-201ENSMUST00000113438 8016 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.63
Trim63Q38HM4 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
Trim63Q38HM4 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.63
Trim63Q38HM4 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Trim63Q38HM4 Gfm1-201ENSMUST00000077271 4078 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Gm13730-201ENSMUST00000121036 1462 ntBASIC11.14□□□□□ -0.63
Trim63Q38HM4 Nipbl-201ENSMUST00000052965 8815 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Gm5124-202ENSMUST00000132683 2083 ntBASIC11.14□□□□□ -0.63
Trim63Q38HM4 Gm10327-201ENSMUST00000105222 1002 ntBASIC11.14□□□□□ -0.63
Trim63Q38HM4 Gm5643-201ENSMUST00000117081 966 ntBASIC11.14□□□□□ -0.63
Trim63Q38HM4 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Gm26039-201ENSMUST00000158152 144 ntBASIC11.14□□□□□ -0.63
Trim63Q38HM4 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Gm10698-201ENSMUST00000182663 604 ntBASIC11.14□□□□□ -0.63
Trim63Q38HM4 Gm5069-202ENSMUST00000192714 1011 ntBASIC11.14□□□□□ -0.63
Trim63Q38HM4 Gm2451-201ENSMUST00000199447 999 ntBASIC11.14□□□□□ -0.63
Trim63Q38HM4 Gm10290-201ENSMUST00000200451 999 ntBASIC11.14□□□□□ -0.63
Trim63Q38HM4 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 AC156016.1-201ENSMUST00000227190 1035 ntBASIC11.14□□□□□ -0.63
Trim63Q38HM4 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Gm5385-201ENSMUST00000118988 1559 ntBASIC11.14□□□□□ -0.63
Trim63Q38HM4 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Scml2-201ENSMUST00000019101 4842 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Zfp710-202ENSMUST00000164056 5871 ntAPPRIS P4 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Tex2-201ENSMUST00000042780 4934 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Tbl2-204ENSMUST00000153183 7488 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim63Q38HM4 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Gm10110-202ENSMUST00000228705 3220 ntBASIC11.13□□□□□ -0.63
Trim63Q38HM4 Scml2-206ENSMUST00000112345 4847 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Trim63Q38HM4 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Smarca2-209ENSMUST00000176030 5862 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Mfsd4b5-203ENSMUST00000164566 2372 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC11.13□□□□□ -0.63
Trim63Q38HM4 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms