Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Gm11661-201ENSMUST00000121761 1327 ntBASIC11.72□□□□□ -0.53
Nkx3-1P97436 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Proscos-202ENSMUST00000178990 666 ntBASIC11.72□□□□□ -0.53
Nkx3-1P97436 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC11.72□□□□□ -0.53
Nkx3-1P97436 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 AC073947.2-201ENSMUST00000215888 1130 ntBASIC11.72□□□□□ -0.53
Nkx3-1P97436 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC11.72□□□□□ -0.53
Nkx3-1P97436 AC155237.1-201ENSMUST00000226196 1279 ntBASIC11.72□□□□□ -0.53
Nkx3-1P97436 AC131997.1-201ENSMUST00000228611 1229 ntBASIC11.72□□□□□ -0.53
Nkx3-1P97436 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Gm38102-201ENSMUST00000192791 1935 ntBASIC11.72□□□□□ -0.53
Nkx3-1P97436 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Nkx3-1P97436 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Zkscan14-203ENSMUST00000198959 2243 ntBASIC11.71□□□□□ -0.53
Nkx3-1P97436 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Mir1247-201ENSMUST00000116706 82 ntBASIC11.71□□□□□ -0.53
Nkx3-1P97436 Gm15198-201ENSMUST00000117283 177 ntBASIC11.71□□□□□ -0.53
Nkx3-1P97436 Gm15770-201ENSMUST00000117498 584 ntBASIC11.71□□□□□ -0.53
Nkx3-1P97436 Gm8213-201ENSMUST00000118191 441 ntBASIC11.71□□□□□ -0.53
Nkx3-1P97436 Gm10156-201ENSMUST00000122364 462 ntBASIC11.71□□□□□ -0.53
Nkx3-1P97436 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC11.71□□□□□ -0.53
Nkx3-1P97436 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Gm27331-201ENSMUST00000183705 60 ntBASIC11.71□□□□□ -0.53
Nkx3-1P97436 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Gm29705-201ENSMUST00000212598 474 ntBASIC11.71□□□□□ -0.53
Nkx3-1P97436 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC11.71□□□□□ -0.53
Nkx3-1P97436 Rassf8-202ENSMUST00000058538 1131 ntBASIC11.71□□□□□ -0.53
Nkx3-1P97436 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Nkx3-1P97436 Nupl1-207ENSMUST00000225311 2475 ntBASIC11.71□□□□□ -0.53
Nkx3-1P97436 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Nkx3-1P97436 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Nkx3-1P97436 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.54
Nkx3-1P97436 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
Nkx3-1P97436 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Nkx3-1P97436 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Nkx3-1P97436 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Nkx3-1P97436 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC11.71□□□□□ -0.54
Nkx3-1P97436 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC11.71□□□□□ -0.54
Nkx3-1P97436 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Nkx3-1P97436 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Nkx3-1P97436 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms