Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Msx3P70354 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Msx3P70354 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC13.97□□□□□ -0.17
Msx3P70354 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC13.97□□□□□ -0.17
Msx3P70354 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Msx3P70354 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Mir6956-201ENSMUST00000183598 62 ntBASIC13.97□□□□□ -0.17
Msx3P70354 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx3P70354 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msx3P70354 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msx3P70354 Gm38346-201ENSMUST00000192379 2639 ntBASIC13.96□□□□□ -0.17
Msx3P70354 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msx3P70354 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Msx3P70354 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msx3P70354 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msx3P70354 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msx3P70354 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msx3P70354 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
Msx3P70354 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Msx3P70354 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msx3P70354 AC161252.3-201ENSMUST00000225465 1549 ntBASIC13.96□□□□□ -0.17
Msx3P70354 Gm38197-201ENSMUST00000192320 2122 ntBASIC13.96□□□□□ -0.17
Msx3P70354 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Msx3P70354 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msx3P70354 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC13.96□□□□□ -0.17
Msx3P70354 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msx3P70354 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC13.96□□□□□ -0.17
Msx3P70354 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Msx3P70354 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC13.96□□□□□ -0.17
Msx3P70354 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC13.96□□□□□ -0.17
Msx3P70354 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
Msx3P70354 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
Msx3P70354 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC13.96□□□□□ -0.17
Msx3P70354 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC13.96□□□□□ -0.17
Msx3P70354 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msx3P70354 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC13.96□□□□□ -0.17
Msx3P70354 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msx3P70354 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
Msx3P70354 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
Msx3P70354 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msx3P70354 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Msx3P70354 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Msx3P70354 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msx3P70354 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Msx3P70354 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Msx3P70354 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
Msx3P70354 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Msx3P70354 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Msx3P70354 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Msx3P70354 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Msx3P70354 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC13.96□□□□□ -0.18
Msx3P70354 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Msx3P70354 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC13.95□□□□□ -0.18
Msx3P70354 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC13.95□□□□□ -0.18
Msx3P70354 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC13.95□□□□□ -0.18
Msx3P70354 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC13.95□□□□□ -0.18
Msx3P70354 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Msx3P70354 Gm44872-201ENSMUST00000207864 420 ntBASIC13.95□□□□□ -0.18
Msx3P70354 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC13.95□□□□□ -0.18
Msx3P70354 AC165157.4-201ENSMUST00000220587 139 ntBASIC13.95□□□□□ -0.18
Msx3P70354 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Msx3P70354 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Msx3P70354 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms