Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC20.54■□□□□ 0.88
Cux1P53564 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux1P53564 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC20.54■□□□□ 0.88
Cux1P53564 Mir5132-201ENSMUST00000175166 71 ntBASIC20.54■□□□□ 0.88
Cux1P53564 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
Cux1P53564 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC20.54■□□□□ 0.88
Cux1P53564 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux1P53564 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux1P53564 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux1P53564 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux1P53564 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Cux1P53564 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux1P53564 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC20.54■□□□□ 0.88
Cux1P53564 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Cux1P53564 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC20.54■□□□□ 0.88
Cux1P53564 Gm4366-201ENSMUST00000201488 1342 ntBASIC20.54■□□□□ 0.88
Cux1P53564 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux1P53564 Gm44775-201ENSMUST00000207266 1456 ntBASIC20.54■□□□□ 0.88
Cux1P53564 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux1P53564 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Cux1P53564 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux1P53564 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux1P53564 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux1P53564 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Cux1P53564 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Gm10434-201ENSMUST00000101158 471 ntBASIC20.53■□□□□ 0.88
Cux1P53564 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC20.53■□□□□ 0.88
Cux1P53564 Gm8885-201ENSMUST00000189382 598 ntBASIC20.53■□□□□ 0.88
Cux1P53564 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Cux1P53564 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Cux1P53564 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Cux1P53564 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Cux1P53564 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Gm24990-201ENSMUST00000157406 323 ntBASIC20.53■□□□□ 0.88
Cux1P53564 Gm5869-201ENSMUST00000200248 1257 ntBASIC20.53■□□□□ 0.88
Cux1P53564 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux1P53564 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cux1P53564 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cux1P53564 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Cux1P53564 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cux1P53564 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Cux1P53564 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Cux1P53564 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cux1P53564 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Cux1P53564 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Cux1P53564 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cux1P53564 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC20.52■□□□□ 0.87
Cux1P53564 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Cux1P53564 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC20.52■□□□□ 0.87
Cux1P53564 Gm2260-201ENSMUST00000184965 657 ntBASIC20.52■□□□□ 0.87
Cux1P53564 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC20.52■□□□□ 0.87
Cux1P53564 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Cux1P53564 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Cux1P53564 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Cux1P53564 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Cux1P53564 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Cux1P53564 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Cux1P53564 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Cux1P53564 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cux1P53564 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cux1P53564 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cux1P53564 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Cux1P53564 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cux1P53564 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cux1P53564 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
Cux1P53564 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Cux1P53564 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC20.51■□□□□ 0.87
Cux1P53564 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Cux1P53564 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cux1P53564 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cux1P53564 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Cux1P53564 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Cux1P53564 Gm37133-201ENSMUST00000192705 1922 ntBASIC20.51■□□□□ 0.87
Cux1P53564 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cux1P53564 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cux1P53564 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cux1P53564 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cux1P53564 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Cux1P53564 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cux1P53564 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Cux1P53564 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Cux1P53564 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 89.9 ms