Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Rfx1P48377 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Rfx1P48377 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Rfx1P48377 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC16.23■□□□□ 0.19
Rfx1P48377 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Rfx1P48377 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx1P48377 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx1P48377 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx1P48377 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Rfx1P48377 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx1P48377 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx1P48377 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx1P48377 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx1P48377 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
Rfx1P48377 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Rfx1P48377 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx1P48377 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx1P48377 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx1P48377 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx1P48377 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC16.22■□□□□ 0.19
Rfx1P48377 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC16.22■□□□□ 0.19
Rfx1P48377 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rfx1P48377 Gm8775-201ENSMUST00000170943 1327 ntBASIC16.21■□□□□ 0.19
Rfx1P48377 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rfx1P48377 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Rfx1P48377 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Rfx1P48377 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC16.21■□□□□ 0.19
Rfx1P48377 Gm45706-201ENSMUST00000213063 2136 ntBASIC16.21■□□□□ 0.19
Rfx1P48377 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Rfx1P48377 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Rfx1P48377 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rfx1P48377 Gm14494-201ENSMUST00000118786 435 ntBASIC16.21■□□□□ 0.19
Rfx1P48377 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
Rfx1P48377 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
Rfx1P48377 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC16.21■□□□□ 0.19
Rfx1P48377 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC16.21■□□□□ 0.19
Rfx1P48377 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC16.21■□□□□ 0.19
Rfx1P48377 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC16.21■□□□□ 0.19
Rfx1P48377 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Rfx1P48377 Gm10175-201ENSMUST00000086013 645 ntBASIC16.21■□□□□ 0.19
Rfx1P48377 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
Rfx1P48377 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Rfx1P48377 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rfx1P48377 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rfx1P48377 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Rfx1P48377 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Rfx1P48377 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Rfx1P48377 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx1P48377 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx1P48377 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Rfx1P48377 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Rfx1P48377 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
Rfx1P48377 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC16.2■□□□□ 0.18
Rfx1P48377 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Rfx1P48377 Rprl2-201ENSMUST00000157150 290 ntBASIC16.2■□□□□ 0.18
Rfx1P48377 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC16.2■□□□□ 0.18
Rfx1P48377 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC16.2■□□□□ 0.18
Rfx1P48377 Gm18049-201ENSMUST00000208909 581 ntBASIC16.2■□□□□ 0.18
Rfx1P48377 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC16.2■□□□□ 0.18
Rfx1P48377 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Rfx1P48377 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx1P48377 AC122314.1-201ENSMUST00000223056 2239 ntBASIC16.2■□□□□ 0.18
Rfx1P48377 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx1P48377 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx1P48377 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx1P48377 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Rfx1P48377 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx1P48377 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx1P48377 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Rfx1P48377 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx1P48377 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
Rfx1P48377 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx1P48377 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Rfx1P48377 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx1P48377 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx1P48377 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx1P48377 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx1P48377 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx1P48377 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
Rfx1P48377 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx1P48377 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx1P48377 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx1P48377 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx1P48377 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
Rfx1P48377 Gm13332-201ENSMUST00000120451 1398 ntBASIC16.19■□□□□ 0.18
Rfx1P48377 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC16.19■□□□□ 0.18
Rfx1P48377 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC16.19■□□□□ 0.18
Rfx1P48377 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC16.19■□□□□ 0.18
Rfx1P48377 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Rfx1P48377 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC16.19■□□□□ 0.18
Rfx1P48377 Gm18766-201ENSMUST00000189811 808 ntBASIC16.19■□□□□ 0.18
Rfx1P48377 Ighv1-25-201ENSMUST00000195638 345 ntBASIC16.19■□□□□ 0.18
Rfx1P48377 Gm6916-202ENSMUST00000205523 195 ntBASIC16.19■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms