Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Col3a1P08121 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
Col3a1P08121 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Col3a1P08121 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC16.02■□□□□ 0.15
Col3a1P08121 Gm8805-201ENSMUST00000117848 313 ntBASIC16.02■□□□□ 0.15
Col3a1P08121 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Col3a1P08121 Mir3102-201ENSMUST00000175555 104 ntBASIC16.02■□□□□ 0.15
Col3a1P08121 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC16.02■□□□□ 0.15
Col3a1P08121 Gm42627-201ENSMUST00000197347 224 ntBASIC16.02■□□□□ 0.15
Col3a1P08121 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC16.02■□□□□ 0.15
Col3a1P08121 AC135669.1-202ENSMUST00000216742 540 ntBASIC16.02■□□□□ 0.15
Col3a1P08121 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC16.02■□□□□ 0.15
Col3a1P08121 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Col3a1P08121 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Col3a1P08121 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Col3a1P08121 AC153366.2-201ENSMUST00000219461 1984 ntBASIC16.02■□□□□ 0.15
Col3a1P08121 Gm42769-201ENSMUST00000198576 1659 ntBASIC16.02■□□□□ 0.15
Col3a1P08121 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col3a1P08121 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col3a1P08121 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col3a1P08121 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC16.01■□□□□ 0.15
Col3a1P08121 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col3a1P08121 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Col3a1P08121 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col3a1P08121 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col3a1P08121 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Col3a1P08121 AC154725.1-201ENSMUST00000224826 1961 ntBASIC16.01■□□□□ 0.15
Col3a1P08121 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC16.01■□□□□ 0.15
Col3a1P08121 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col3a1P08121 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Col3a1P08121 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Col3a1P08121 Gm27516-201ENSMUST00000184237 98 ntBASIC16.01■□□□□ 0.15
Col3a1P08121 Gm19163-201ENSMUST00000223313 780 ntBASIC16.01■□□□□ 0.15
Col3a1P08121 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC16.01■□□□□ 0.15
Col3a1P08121 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col3a1P08121 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Col3a1P08121 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col3a1P08121 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col3a1P08121 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC16.01■□□□□ 0.15
Col3a1P08121 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col3a1P08121 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col3a1P08121 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col3a1P08121 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
Col3a1P08121 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col3a1P08121 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col3a1P08121 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC16■□□□□ 0.15
Col3a1P08121 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col3a1P08121 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC16■□□□□ 0.15
Col3a1P08121 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC16■□□□□ 0.15
Col3a1P08121 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC16■□□□□ 0.15
Col3a1P08121 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC16■□□□□ 0.15
Col3a1P08121 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC16■□□□□ 0.15
Col3a1P08121 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC16■□□□□ 0.15
Col3a1P08121 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC16■□□□□ 0.15
Col3a1P08121 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC16■□□□□ 0.15
Col3a1P08121 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC16■□□□□ 0.15
Col3a1P08121 Cts7-204ENSMUST00000225321 1257 ntBASIC16■□□□□ 0.15
Col3a1P08121 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col3a1P08121 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Col3a1P08121 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC16■□□□□ 0.15
Col3a1P08121 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Col3a1P08121 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Col3a1P08121 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col3a1P08121 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC16■□□□□ 0.15
Col3a1P08121 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col3a1P08121 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 Gm15236-201ENSMUST00000117309 379 ntBASIC15.99■□□□□ 0.15
Col3a1P08121 Gm22121-201ENSMUST00000175148 54 ntBASIC15.99■□□□□ 0.15
Col3a1P08121 Mir7221-201ENSMUST00000184009 72 ntBASIC15.99■□□□□ 0.15
Col3a1P08121 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 Gm43758-201ENSMUST00000199500 367 ntBASIC15.99■□□□□ 0.15
Col3a1P08121 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC15.99■□□□□ 0.15
Col3a1P08121 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 Gm7046-201ENSMUST00000221351 977 ntBASIC15.99■□□□□ 0.15
Col3a1P08121 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
Col3a1P08121 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Col3a1P08121 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
Col3a1P08121 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Col3a1P08121 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC15.99■□□□□ 0.15
Col3a1P08121 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Col3a1P08121 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col3a1P08121 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms