Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Usp47Q8BY87 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp47Q8BY87 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp47Q8BY87 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp47Q8BY87 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp47Q8BY87 Gm14660-201ENSMUST00000119809 575 ntBASIC19.11■□□□□ 0.65
Usp47Q8BY87 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC19.11■□□□□ 0.65
Usp47Q8BY87 Gm38230-201ENSMUST00000193572 1159 ntBASIC19.11■□□□□ 0.65
Usp47Q8BY87 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC19.11■□□□□ 0.65
Usp47Q8BY87 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC19.11■□□□□ 0.65
Usp47Q8BY87 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp47Q8BY87 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp47Q8BY87 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Usp47Q8BY87 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp47Q8BY87 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Usp47Q8BY87 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Usp47Q8BY87 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp47Q8BY87 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Usp47Q8BY87 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp47Q8BY87 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC19.11■□□□□ 0.65
Usp47Q8BY87 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp47Q8BY87 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
Usp47Q8BY87 AC134335.2-201ENSMUST00000227660 440 ntBASIC19.1■□□□□ 0.65
Usp47Q8BY87 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp47Q8BY87 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Gm42769-201ENSMUST00000198576 1659 ntBASIC19.09■□□□□ 0.65
Usp47Q8BY87 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Gm13123-201ENSMUST00000122173 492 ntBASIC19.09■□□□□ 0.65
Usp47Q8BY87 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Gm29705-201ENSMUST00000212598 474 ntBASIC19.09■□□□□ 0.65
Usp47Q8BY87 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC19.09■□□□□ 0.65
Usp47Q8BY87 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Gm11405-201ENSMUST00000118689 1556 ntBASIC19.09■□□□□ 0.65
Usp47Q8BY87 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Gm19863-201ENSMUST00000192480 2218 ntBASIC19.09■□□□□ 0.65
Usp47Q8BY87 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Usp47Q8BY87 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Usp47Q8BY87 Gm11618-201ENSMUST00000117946 267 ntBASIC19.08■□□□□ 0.65
Usp47Q8BY87 Gm4271-201ENSMUST00000174444 973 ntBASIC19.08■□□□□ 0.65
Usp47Q8BY87 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
Usp47Q8BY87 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC19.08■□□□□ 0.65
Usp47Q8BY87 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC19.08■□□□□ 0.65
Usp47Q8BY87 Gm44069-201ENSMUST00000204898 506 ntBASIC19.08■□□□□ 0.65
Usp47Q8BY87 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC19.08■□□□□ 0.65
Usp47Q8BY87 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Usp47Q8BY87 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Usp47Q8BY87 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Usp47Q8BY87 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Usp47Q8BY87 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.65
Usp47Q8BY87 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Usp47Q8BY87 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Usp47Q8BY87 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
Usp47Q8BY87 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Usp47Q8BY87 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Usp47Q8BY87 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
Usp47Q8BY87 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Usp47Q8BY87 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC19.08■□□□□ 0.64
Usp47Q8BY87 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Usp47Q8BY87 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Usp47Q8BY87 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC19.08■□□□□ 0.64
Usp47Q8BY87 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.64
Usp47Q8BY87 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC19.07■□□□□ 0.64
Usp47Q8BY87 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp47Q8BY87 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Usp47Q8BY87 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Usp47Q8BY87 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp47Q8BY87 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp47Q8BY87 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms