Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Usp40Q8BWR4 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Usp40Q8BWR4 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Usp40Q8BWR4 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Usp40Q8BWR4 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Usp40Q8BWR4 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Usp40Q8BWR4 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Usp40Q8BWR4 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC18.58■□□□□ 0.56
Usp40Q8BWR4 Gm38002-201ENSMUST00000193255 180 ntBASIC18.58■□□□□ 0.56
Usp40Q8BWR4 Gm38319-201ENSMUST00000194537 1266 ntBASIC18.58■□□□□ 0.56
Usp40Q8BWR4 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC18.58■□□□□ 0.56
Usp40Q8BWR4 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Usp40Q8BWR4 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Usp40Q8BWR4 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC18.58■□□□□ 0.56
Usp40Q8BWR4 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
Usp40Q8BWR4 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Usp40Q8BWR4 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Usp40Q8BWR4 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Usp40Q8BWR4 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Usp40Q8BWR4 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Gm18222-201ENSMUST00000202416 1387 ntBASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Gm37008-201ENSMUST00000195712 319 ntBASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Gm43179-201ENSMUST00000198797 275 ntBASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Gm6013-201ENSMUST00000212264 699 ntBASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Olfr582-201ENSMUST00000098212 960 ntBASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usp40Q8BWR4 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Mir686-201ENSMUST00000102174 109 ntBASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Gm8805-201ENSMUST00000117848 313 ntBASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp40Q8BWR4 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Gm25261-201ENSMUST00000157416 134 ntBASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Gm43056-201ENSMUST00000197865 2791 ntBASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp40Q8BWR4 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms