Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Zkscan14-203ENSMUST00000198959 2243 ntBASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Gm42829-201ENSMUST00000198417 2585 ntBASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Gm27920-201ENSMUST00000183953 96 ntBASIC12.76□□□□□ -0.37
Trim40Q3UWA4 CT025555.1-201ENSMUST00000225901 1217 ntBASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Psmb5-202ENSMUST00000227257 622 ntBASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Gm6756-201ENSMUST00000180647 1620 ntBASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trim40Q3UWA4 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Gm5385-201ENSMUST00000118988 1559 ntBASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Gm20633-201ENSMUST00000176742 2831 ntBASIC12.75□□□□□ -0.37
Trim40Q3UWA4 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Gm8337-201ENSMUST00000187358 1938 ntBASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Ighv8-14-201ENSMUST00000196781 358 ntBASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC12.75□□□□□ -0.37
Trim40Q3UWA4 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Mzt1-203ENSMUST00000227948 952 ntBASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim40Q3UWA4 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 AC155298.2-201ENSMUST00000225485 6226 ntBASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms