Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Gm28631-201ENSMUST00000190740 334 ntBASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Gm7498-201ENSMUST00000203282 1084 ntBASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 AC135669.1-201ENSMUST00000213585 412 ntBASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Gm19220-201ENSMUST00000222682 803 ntBASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Ntrk2-209ENSMUST00000225950 2640 ntBASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Gm15770-201ENSMUST00000117498 584 ntBASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3bQ3ULL6 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Gm20632-201ENSMUST00000176760 2427 ntBASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Ldha-ps-201ENSMUST00000119390 995 ntBASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Gm6473-201ENSMUST00000188572 1210 ntBASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 AL593843.1-201ENSMUST00000195891 145 ntBASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 AC155258.1-201ENSMUST00000219303 253 ntBASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3bQ3ULL6 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 Gm19078-201ENSMUST00000206311 727 ntBASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 AC154687.2-201ENSMUST00000223853 640 ntBASIC14.55□□□□□ -0.08
Upf3bQ3ULL6 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms