Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Col8a1Q00780 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col8a1Q00780 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Col8a1Q00780 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col8a1Q00780 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col8a1Q00780 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Col8a1Q00780 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col8a1Q00780 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col8a1Q00780 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Col8a1Q00780 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC11.6□□□□□ -0.55
Col8a1Q00780 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Col8a1Q00780 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC11.6□□□□□ -0.55
Col8a1Q00780 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Gm14730-201ENSMUST00000122378 1045 ntBASIC11.6□□□□□ -0.55
Col8a1Q00780 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC11.6□□□□□ -0.55
Col8a1Q00780 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC11.6□□□□□ -0.55
Col8a1Q00780 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC11.6□□□□□ -0.55
Col8a1Q00780 Gm6152-201ENSMUST00000151704 340 ntBASIC11.6□□□□□ -0.55
Col8a1Q00780 Gm7498-201ENSMUST00000203282 1084 ntBASIC11.6□□□□□ -0.55
Col8a1Q00780 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC11.6□□□□□ -0.55
Col8a1Q00780 Gm5363-201ENSMUST00000211927 938 ntBASIC11.6□□□□□ -0.55
Col8a1Q00780 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Col8a1Q00780 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC11.6□□□□□ -0.55
Col8a1Q00780 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC11.6□□□□□ -0.55
Col8a1Q00780 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Col8a1Q00780 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC11.6□□□□□ -0.55
Col8a1Q00780 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col8a1Q00780 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Col8a1Q00780 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC11.6□□□□□ -0.55
Col8a1Q00780 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
Col8a1Q00780 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC11.59□□□□□ -0.55
Col8a1Q00780 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC11.59□□□□□ -0.55
Col8a1Q00780 Mir686-201ENSMUST00000102174 109 ntBASIC11.59□□□□□ -0.55
Col8a1Q00780 Gm22323-201ENSMUST00000103832 109 ntBASIC11.59□□□□□ -0.55
Col8a1Q00780 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC11.59□□□□□ -0.55
Col8a1Q00780 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Col8a1Q00780 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC11.59□□□□□ -0.55
Col8a1Q00780 Gm2991-201ENSMUST00000173338 480 ntBASIC11.59□□□□□ -0.55
Col8a1Q00780 Gm27341-201ENSMUST00000183570 106 ntBASIC11.59□□□□□ -0.55
Col8a1Q00780 Gm29396-201ENSMUST00000185659 716 ntBASIC11.59□□□□□ -0.55
Col8a1Q00780 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC11.59□□□□□ -0.55
Col8a1Q00780 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC11.59□□□□□ -0.55
Col8a1Q00780 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Efs-202ENSMUST00000227037 2540 ntBASIC11.59□□□□□ -0.55
Col8a1Q00780 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Gm45504-201ENSMUST00000211407 2107 ntBASIC11.59□□□□□ -0.55
Col8a1Q00780 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC11.59□□□□□ -0.55
Col8a1Q00780 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC11.59□□□□□ -0.55
Col8a1Q00780 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col8a1Q00780 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Col8a1Q00780 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.55
Col8a1Q00780 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC11.58□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms