Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Ercc3P49135 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC16.16■□□□□ 0.18
Ercc3P49135 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Gm12091-201ENSMUST00000146791 830 ntBASIC16.16■□□□□ 0.18
Ercc3P49135 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Gm6745-201ENSMUST00000199216 526 ntBASIC16.16■□□□□ 0.18
Ercc3P49135 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC16.16■□□□□ 0.18
Ercc3P49135 Gm5425-201ENSMUST00000214125 459 ntBASIC16.16■□□□□ 0.18
Ercc3P49135 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC16.16■□□□□ 0.18
Ercc3P49135 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Gm13859-201ENSMUST00000119936 1423 ntBASIC16.16■□□□□ 0.18
Ercc3P49135 Gm12626-201ENSMUST00000117339 1983 ntBASIC16.16■□□□□ 0.18
Ercc3P49135 Gm12623-201ENSMUST00000119849 1983 ntBASIC16.16■□□□□ 0.18
Ercc3P49135 AC121805.2-201ENSMUST00000218808 2538 ntBASIC16.16■□□□□ 0.18
Ercc3P49135 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Ercc3P49135 AC168058.1-201ENSMUST00000219521 2282 ntBASIC16.16■□□□□ 0.18
Ercc3P49135 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 CT030684.3-201ENSMUST00000227308 2445 ntBASIC16.16■□□□□ 0.18
Ercc3P49135 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ercc3P49135 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC16.15■□□□□ 0.18
Ercc3P49135 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
Ercc3P49135 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
Ercc3P49135 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC16.15■□□□□ 0.18
Ercc3P49135 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Ercc3P49135 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Gm5354-201ENSMUST00000182417 973 ntBASIC16.15■□□□□ 0.18
Ercc3P49135 Gm5745-201ENSMUST00000183748 313 ntBASIC16.15■□□□□ 0.18
Ercc3P49135 Gm9908-201ENSMUST00000211534 448 ntBASIC16.15■□□□□ 0.18
Ercc3P49135 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC16.15■□□□□ 0.18
Ercc3P49135 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Ercc3P49135 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Ercc3P49135 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ercc3P49135 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Ercc3P49135 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC16.15■□□□□ 0.18
Ercc3P49135 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
Ercc3P49135 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Ercc3P49135 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ercc3P49135 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ercc3P49135 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ercc3P49135 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ercc3P49135 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Ercc3P49135 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ercc3P49135 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ercc3P49135 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ercc3P49135 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ercc3P49135 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ercc3P49135 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ercc3P49135 Gm37691-201ENSMUST00000192147 2573 ntBASIC16.14■□□□□ 0.17
Ercc3P49135 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Ercc3P49135 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ercc3P49135 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ercc3P49135 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ercc3P49135 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ercc3P49135 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Ercc3P49135 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ercc3P49135 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ercc3P49135 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC16.14■□□□□ 0.17
Ercc3P49135 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC16.14■□□□□ 0.17
Ercc3P49135 Gm45059-201ENSMUST00000205558 1077 ntBASIC16.14■□□□□ 0.17
Ercc3P49135 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ercc3P49135 Gm45668-201ENSMUST00000211271 493 ntBASIC16.14■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms