Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC14.29□□□□□ -0.12
Usp4P35123 Gm8410-201ENSMUST00000117225 605 ntBASIC14.29□□□□□ -0.12
Usp4P35123 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC14.29□□□□□ -0.12
Usp4P35123 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
Usp4P35123 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC14.29□□□□□ -0.12
Usp4P35123 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC14.29□□□□□ -0.12
Usp4P35123 Ighv8-14-201ENSMUST00000196781 358 ntBASIC14.29□□□□□ -0.12
Usp4P35123 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC14.29□□□□□ -0.12
Usp4P35123 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC14.29□□□□□ -0.12
Usp4P35123 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Usp4P35123 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Usp4P35123 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC14.28□□□□□ -0.12
Usp4P35123 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp4P35123 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp4P35123 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp4P35123 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Usp4P35123 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Usp4P35123 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp4P35123 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp4P35123 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
Usp4P35123 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Usp4P35123 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp4P35123 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC14.28□□□□□ -0.12
Usp4P35123 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp4P35123 Gm6415-201ENSMUST00000118488 348 ntBASIC14.28□□□□□ -0.12
Usp4P35123 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Usp4P35123 Gm15693-201ENSMUST00000120470 637 ntBASIC14.28□□□□□ -0.12
Usp4P35123 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Usp4P35123 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp4P35123 Gm3809-201ENSMUST00000180973 1006 ntBASIC14.28□□□□□ -0.12
Usp4P35123 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp4P35123 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Usp4P35123 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC14.28□□□□□ -0.12
Usp4P35123 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp4P35123 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Usp4P35123 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp4P35123 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp4P35123 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
Usp4P35123 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Usp4P35123 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp4P35123 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp4P35123 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Usp4P35123 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp4P35123 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp4P35123 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp4P35123 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp4P35123 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
Usp4P35123 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp4P35123 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp4P35123 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Usp4P35123 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp4P35123 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp4P35123 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp4P35123 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Usp4P35123 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp4P35123 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Usp4P35123 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC14.27□□□□□ -0.13
Usp4P35123 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC14.27□□□□□ -0.13
Usp4P35123 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Usp4P35123 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC14.27□□□□□ -0.13
Usp4P35123 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC14.27□□□□□ -0.13
Usp4P35123 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp4P35123 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp4P35123 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Usp4P35123 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Usp4P35123 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp4P35123 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Usp4P35123 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC14.27□□□□□ -0.13
Usp4P35123 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp4P35123 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
Usp4P35123 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp4P35123 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Usp4P35123 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp4P35123 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp4P35123 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Usp4P35123 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Usp4P35123 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms