Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Msx1P13297 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Msx1P13297 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC12.98□□□□□ -0.33
Msx1P13297 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
Msx1P13297 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC12.98□□□□□ -0.33
Msx1P13297 Gm12390-201ENSMUST00000117897 397 ntBASIC12.98□□□□□ -0.33
Msx1P13297 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC12.98□□□□□ -0.33
Msx1P13297 Trav4d-2-201ENSMUST00000120914 335 ntBASIC12.98□□□□□ -0.33
Msx1P13297 Gm12702-201ENSMUST00000123258 612 ntTSL 3 BASIC12.98□□□□□ -0.33
Msx1P13297 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC12.98□□□□□ -0.33
Msx1P13297 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC12.98□□□□□ -0.33
Msx1P13297 Gm8835-201ENSMUST00000173096 1169 ntBASIC12.98□□□□□ -0.33
Msx1P13297 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC12.98□□□□□ -0.33
Msx1P13297 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC12.98□□□□□ -0.33
Msx1P13297 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
Msx1P13297 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC12.98□□□□□ -0.33
Msx1P13297 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 AC154757.2-201ENSMUST00000228885 743 ntBASIC12.98□□□□□ -0.33
Msx1P13297 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Rnase9-201ENSMUST00000064214 1189 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx1P13297 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC12.97□□□□□ -0.33
Msx1P13297 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Msx1P13297 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Msx1P13297 Gm45667-201ENSMUST00000210380 1316 ntBASIC12.97□□□□□ -0.33
Msx1P13297 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Msx1P13297 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Mir1894-201ENSMUST00000122802 81 ntBASIC12.97□□□□□ -0.33
Msx1P13297 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC12.97□□□□□ -0.33
Msx1P13297 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC12.97□□□□□ -0.33
Msx1P13297 Csnk1a1-208ENSMUST00000167187 1222 ntTSL 5 BASIC12.97□□□□□ -0.33
Msx1P13297 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC12.97□□□□□ -0.33
Msx1P13297 Gm38170-201ENSMUST00000195404 816 ntBASIC12.97□□□□□ -0.33
Msx1P13297 Ighv1-25-201ENSMUST00000195638 345 ntBASIC12.97□□□□□ -0.33
Msx1P13297 Gm18307-201ENSMUST00000206864 949 ntBASIC12.97□□□□□ -0.33
Msx1P13297 6430710M23Rik-201ENSMUST00000210843 1191 ntBASIC12.97□□□□□ -0.33
Msx1P13297 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC12.97□□□□□ -0.33
Msx1P13297 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Clrn1-201ENSMUST00000051408 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC12.97□□□□□ -0.33
Msx1P13297 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC12.97□□□□□ -0.33
Msx1P13297 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Msx1P13297 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Msx1P13297 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx1P13297 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC12.97□□□□□ -0.33
Msx1P13297 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC12.97□□□□□ -0.33
Msx1P13297 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Msx1P13297 Gm44863-201ENSMUST00000207613 1422 ntBASIC12.96□□□□□ -0.33
Msx1P13297 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Msx1P13297 Gm12020-201ENSMUST00000119030 2042 ntBASIC12.96□□□□□ -0.33
Msx1P13297 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Msx1P13297 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.33
Msx1P13297 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC12.96□□□□□ -0.33
Msx1P13297 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC12.96□□□□□ -0.33
Msx1P13297 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Msx1P13297 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Msx1P13297 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms