Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Hmgb3O54879 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC11.26□□□□□ -0.61
Hmgb3O54879 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC11.26□□□□□ -0.61
Hmgb3O54879 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC11.26□□□□□ -0.61
Hmgb3O54879 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC11.26□□□□□ -0.61
Hmgb3O54879 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC11.26□□□□□ -0.61
Hmgb3O54879 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC11.26□□□□□ -0.61
Hmgb3O54879 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 Col11a1-201ENSMUST00000092155 7667 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 Zdbf2-202ENSMUST00000114132 12629 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Hmgb3O54879 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC11.26□□□□□ -0.61
Hmgb3O54879 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Hmgb3O54879 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC11.26□□□□□ -0.61
Hmgb3O54879 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Gpr158-201ENSMUST00000055946 7171 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Plekhg2-201ENSMUST00000094644 4623 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Hmgb3O54879 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
Hmgb3O54879 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC11.25□□□□□ -0.61
Hmgb3O54879 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Gm5479-201ENSMUST00000160578 435 ntBASIC11.25□□□□□ -0.61
Hmgb3O54879 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC11.25□□□□□ -0.61
Hmgb3O54879 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC11.25□□□□□ -0.61
Hmgb3O54879 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC11.25□□□□□ -0.61
Hmgb3O54879 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC11.25□□□□□ -0.61
Hmgb3O54879 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC11.25□□□□□ -0.61
Hmgb3O54879 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC11.25□□□□□ -0.61
Hmgb3O54879 Gm13233-201ENSMUST00000118760 1443 ntBASIC11.25□□□□□ -0.61
Hmgb3O54879 Gm13244-201ENSMUST00000118855 1446 ntBASIC11.25□□□□□ -0.61
Hmgb3O54879 Gm9109-201ENSMUST00000120254 1405 ntBASIC11.25□□□□□ -0.61
Hmgb3O54879 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Hmgb3O54879 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Hmgb3O54879 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Hmgb3O54879 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Hmgb3O54879 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Gm7153-201ENSMUST00000117092 455 ntBASIC11.24□□□□□ -0.61
Hmgb3O54879 Gm6184-201ENSMUST00000120403 1261 ntBASIC11.24□□□□□ -0.61
Hmgb3O54879 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Gm27300-201ENSMUST00000184085 97 ntBASIC11.24□□□□□ -0.61
Hmgb3O54879 Gm27335-201ENSMUST00000184758 97 ntBASIC11.24□□□□□ -0.61
Hmgb3O54879 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC11.24□□□□□ -0.61
Hmgb3O54879 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC11.24□□□□□ -0.61
Hmgb3O54879 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC11.24□□□□□ -0.61
Hmgb3O54879 Gm45747-201ENSMUST00000212203 999 ntBASIC11.24□□□□□ -0.61
Hmgb3O54879 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Hmgb3O54879 Gm7002-201ENSMUST00000221386 2165 ntBASIC11.24□□□□□ -0.61
Hmgb3O54879 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hmgb3O54879 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Gm28386-201ENSMUST00000189147 1849 ntBASIC11.23□□□□□ -0.61
Hmgb3O54879 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Hmgb3O54879 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC11.23□□□□□ -0.61
Hmgb3O54879 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 127.7 ms