Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Gm13436-201ENSMUST00000120418 567 ntBASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Gm38114-201ENSMUST00000191877 1232 ntBASIC10.9□□□□□ -0.66
Smco4Q9JIS3 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Smco4Q9JIS3 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.67
Smco4Q9JIS3 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Smco4Q9JIS3 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.67
Smco4Q9JIS3 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Smco4Q9JIS3 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
Smco4Q9JIS3 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Smco4Q9JIS3 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.67
Smco4Q9JIS3 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Fip1l1-204ENSMUST00000113536 4769 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Gm11453-201ENSMUST00000117318 1007 ntBASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Gm6623-201ENSMUST00000173570 544 ntBASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Vti1a-206ENSMUST00000225529 1244 ntBASIC10.89□□□□□ -0.67
Smco4Q9JIS3 AC112142.1-201ENSMUST00000228796 918 ntBASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Aff3-203ENSMUST00000095027 5857 ntAPPRIS P2 TSL 5 BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Smco4Q9JIS3 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC10.88□□□□□ -0.67
Smco4Q9JIS3 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Smco4Q9JIS3 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Smco4Q9JIS3 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC10.88□□□□□ -0.67
Smco4Q9JIS3 AC122840.1-201ENSMUST00000220915 3334 ntBASIC10.88□□□□□ -0.67
Smco4Q9JIS3 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Smco4Q9JIS3 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC10.88□□□□□ -0.67
Smco4Q9JIS3 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Smco4Q9JIS3 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Smco4Q9JIS3 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Smco4Q9JIS3 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms