Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Gm37714-201ENSMUST00000194742 342 ntBASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Gm43438-201ENSMUST00000198133 379 ntBASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 CT030704.2-201ENSMUST00000228887 494 ntBASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Gm15889-202ENSMUST00000212669 2443 ntBASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdc40Q9DC48 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Gm9115-201ENSMUST00000120192 1348 ntBASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Gm21854-201ENSMUST00000179901 471 ntBASIC12.68□□□□□ -0.38
Cdc40Q9DC48 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Gm18187-201ENSMUST00000196476 984 ntBASIC12.68□□□□□ -0.38
Cdc40Q9DC48 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 AC154687.2-201ENSMUST00000223853 640 ntBASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC12.68□□□□□ -0.38
Cdc40Q9DC48 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Gm12020-201ENSMUST00000119030 2042 ntBASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Gm3809-201ENSMUST00000180973 1006 ntBASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Gm2445-201ENSMUST00000182798 989 ntBASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Mir6392-201ENSMUST00000184924 108 ntBASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 AC149294.4-201ENSMUST00000227870 882 ntBASIC12.67□□□□□ -0.38
Cdc40Q9DC48 AC154806.6-201ENSMUST00000228192 202 ntBASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms