Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Gm20633-201ENSMUST00000176742 2831 ntBASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Ddx28Q9CWT6 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Gm13015-201ENSMUST00000118674 204 ntBASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Gm43125-201ENSMUST00000201724 730 ntBASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Gm18049-201ENSMUST00000208909 581 ntBASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Ddx28Q9CWT6 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Gm27194-201ENSMUST00000175753 2936 ntBASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms