Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Tcf21-202ENSMUST00000218002 1788 ntBASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Gm45453-201ENSMUST00000211758 853 ntBASIC15.29■□□□□ 0.04
Smc1aQ9CU62 AC149588.3-201ENSMUST00000227515 150 ntBASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1aQ9CU62 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Gm9229-201ENSMUST00000222777 126 ntBASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Gm6180-201ENSMUST00000065243 498 ntBASIC15.28■□□□□ 0.04
Smc1aQ9CU62 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Smc1aQ9CU62 Gm14451-201ENSMUST00000121581 1542 ntBASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Ldb3-207ENSMUST00000227819 1499 ntBASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Il17rd-203ENSMUST00000225146 3366 ntBASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms