Protein–RNA interactions for Protein: Q8R1T1

Chmp7, Charged multivesicular body protein 7, mousemouse

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp7Q8R1T1 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Chmp7Q8R1T1 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Chmp7Q8R1T1 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Chmp7Q8R1T1 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Chmp7Q8R1T1 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Chmp7Q8R1T1 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Chmp7Q8R1T1 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Chmp7Q8R1T1 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Chmp7Q8R1T1 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Chmp7Q8R1T1 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Chmp7Q8R1T1 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Gm22018-201ENSMUST00000104357 131 ntBASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Gm7172-201ENSMUST00000218047 1152 ntBASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp7Q8R1T1 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Gm14350-201ENSMUST00000116642 640 ntBASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Gm26927-201ENSMUST00000182385 965 ntBASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 AC173210.1-201ENSMUST00000222341 1131 ntBASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Abhd6-203ENSMUST00000225234 1958 ntBASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Gm5620-201ENSMUST00000077991 1348 ntBASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Gm18630-201ENSMUST00000222109 1397 ntBASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC17.36■□□□□ 0.37
Chmp7Q8R1T1 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Mir686-201ENSMUST00000102174 109 ntBASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Gm9257-201ENSMUST00000221254 232 ntBASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 AC133598.1-201ENSMUST00000224327 660 ntBASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 AC140406.1-201ENSMUST00000226481 465 ntBASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Gm10146-201ENSMUST00000072739 309 ntBASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp7Q8R1T1 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms