Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 AC167013.2-201ENSMUST00000228520 2684 ntBASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ubfd1Q78JW9 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Gm20632-201ENSMUST00000176760 2427 ntBASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Gm6152-201ENSMUST00000151704 340 ntBASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Gm8652-201ENSMUST00000181363 964 ntBASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Gm27847-201ENSMUST00000183711 107 ntBASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Gm27375-201ENSMUST00000183799 107 ntBASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ubfd1Q78JW9 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Gm12390-201ENSMUST00000117897 397 ntBASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Gm5687-201ENSMUST00000118252 640 ntBASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Gm12537-201ENSMUST00000119266 1002 ntBASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Gm12070-201ENSMUST00000119551 1002 ntBASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Gm12671-201ENSMUST00000119978 1002 ntBASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Gm13292-201ENSMUST00000120014 1000 ntBASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Gm12403-201ENSMUST00000121384 959 ntBASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Gm10359-201ENSMUST00000180167 1002 ntBASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Gm12033-201ENSMUST00000180654 1002 ntBASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Gm5559-201ENSMUST00000180755 1002 ntBASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Gm4335-201ENSMUST00000182581 1004 ntBASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Ankra2-208ENSMUST00000226100 1476 ntBASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Itm2b-204ENSMUST00000228637 783 ntBASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ubfd1Q78JW9 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms