Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 AC132863.2-201ENSMUST00000226643 799 ntBASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 AC154747.3-201ENSMUST00000224471 3470 ntBASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Syt7-204ENSMUST00000223586 1344 ntBASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Ntrk2-204ENSMUST00000224259 3049 ntBASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 AC238940.1-201ENSMUST00000225106 1858 ntBASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 AC135669.1-201ENSMUST00000213585 412 ntBASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sh3rf1Q69ZI1 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
Sh3rf1Q69ZI1 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC13.83□□□□□ -0.19
Sh3rf1Q69ZI1 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Sh3rf1Q69ZI1 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC13.83□□□□□ -0.19
Sh3rf1Q69ZI1 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Gm4204-201ENSMUST00000110798 1231 ntBASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Gm5566-201ENSMUST00000116118 459 ntBASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Gm7488-201ENSMUST00000117148 684 ntBASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Gm27838-201ENSMUST00000184829 128 ntBASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC13.83□□□□□ -0.2
Sh3rf1Q69ZI1 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms