Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Usf1Q61069 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
Usf1Q61069 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Usf1Q61069 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC12.38□□□□□ -0.43
Usf1Q61069 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
Usf1Q61069 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Gm22323-201ENSMUST00000103832 109 ntBASIC12.38□□□□□ -0.43
Usf1Q61069 Gm24255-201ENSMUST00000104481 128 ntBASIC12.38□□□□□ -0.43
Usf1Q61069 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Usf1Q61069 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC12.38□□□□□ -0.43
Usf1Q61069 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC12.38□□□□□ -0.43
Usf1Q61069 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC12.38□□□□□ -0.43
Usf1Q61069 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Usf1Q61069 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Usf1Q61069 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Gm45684-201ENSMUST00000210244 1571 ntBASIC12.38□□□□□ -0.43
Usf1Q61069 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usf1Q61069 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC12.37□□□□□ -0.43
Usf1Q61069 Gm44207-201ENSMUST00000204568 1424 ntBASIC12.37□□□□□ -0.43
Usf1Q61069 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
Usf1Q61069 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC12.37□□□□□ -0.43
Usf1Q61069 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Usf1Q61069 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC12.37□□□□□ -0.43
Usf1Q61069 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Gm37736-201ENSMUST00000193564 2802 ntBASIC12.37□□□□□ -0.43
Usf1Q61069 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Usf1Q61069 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Gm12749-201ENSMUST00000122138 1159 ntBASIC12.37□□□□□ -0.43
Usf1Q61069 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC12.37□□□□□ -0.43
Usf1Q61069 Gm37489-201ENSMUST00000191883 159 ntBASIC12.37□□□□□ -0.43
Usf1Q61069 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC12.37□□□□□ -0.43
Usf1Q61069 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
Usf1Q61069 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC12.37□□□□□ -0.43
Usf1Q61069 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC12.37□□□□□ -0.43
Usf1Q61069 Gm8227-201ENSMUST00000223306 571 ntBASIC12.37□□□□□ -0.43
Usf1Q61069 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Usf1Q61069 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Usf1Q61069 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Usf1Q61069 Gm43579-201ENSMUST00000202387 1307 ntBASIC12.37□□□□□ -0.43
Usf1Q61069 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usf1Q61069 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC12.36□□□□□ -0.43
Usf1Q61069 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usf1Q61069 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Usf1Q61069 AC153366.2-201ENSMUST00000219461 1984 ntBASIC12.36□□□□□ -0.43
Usf1Q61069 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usf1Q61069 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usf1Q61069 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Usf1Q61069 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usf1Q61069 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usf1Q61069 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usf1Q61069 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usf1Q61069 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC12.36□□□□□ -0.43
Usf1Q61069 Gm6023-201ENSMUST00000118217 606 ntBASIC12.36□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms