Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC11.63□□□□□ -0.55
Col8a1Q00780 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC11.63□□□□□ -0.55
Col8a1Q00780 Gm38223-201ENSMUST00000194484 695 ntBASIC11.63□□□□□ -0.55
Col8a1Q00780 Gm43138-201ENSMUST00000199123 708 ntBASIC11.63□□□□□ -0.55
Col8a1Q00780 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC11.63□□□□□ -0.55
Col8a1Q00780 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC11.63□□□□□ -0.55
Col8a1Q00780 Gm18027-201ENSMUST00000218947 619 ntBASIC11.63□□□□□ -0.55
Col8a1Q00780 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Col8a1Q00780 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Col8a1Q00780 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
Col8a1Q00780 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC11.63□□□□□ -0.55
Col8a1Q00780 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Col8a1Q00780 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Gm42471-201ENSMUST00000201457 1865 ntBASIC11.63□□□□□ -0.55
Col8a1Q00780 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Col8a1Q00780 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC11.63□□□□□ -0.55
Col8a1Q00780 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC11.63□□□□□ -0.55
Col8a1Q00780 Gm43289-201ENSMUST00000200537 1475 ntBASIC11.63□□□□□ -0.55
Col8a1Q00780 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC11.62□□□□□ -0.55
Col8a1Q00780 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Col8a1Q00780 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Col8a1Q00780 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC11.62□□□□□ -0.55
Col8a1Q00780 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Col8a1Q00780 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Col8a1Q00780 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC11.62□□□□□ -0.55
Col8a1Q00780 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC11.62□□□□□ -0.55
Col8a1Q00780 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC11.62□□□□□ -0.55
Col8a1Q00780 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC11.62□□□□□ -0.55
Col8a1Q00780 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC11.62□□□□□ -0.55
Col8a1Q00780 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Gm6082-201ENSMUST00000215204 454 ntBASIC11.62□□□□□ -0.55
Col8a1Q00780 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Col8a1Q00780 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Col8a1Q00780 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col8a1Q00780 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Col8a1Q00780 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Col8a1Q00780 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Col8a1Q00780 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Col8a1Q00780 Gm44207-201ENSMUST00000204568 1424 ntBASIC11.61□□□□□ -0.55
Col8a1Q00780 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC11.61□□□□□ -0.55
Col8a1Q00780 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Col8a1Q00780 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Col8a1Q00780 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
Col8a1Q00780 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col8a1Q00780 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col8a1Q00780 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Col8a1Q00780 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col8a1Q00780 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Col8a1Q00780 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC11.61□□□□□ -0.55
Col8a1Q00780 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC11.61□□□□□ -0.55
Col8a1Q00780 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Col8a1Q00780 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC11.61□□□□□ -0.55
Col8a1Q00780 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC11.61□□□□□ -0.55
Col8a1Q00780 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Col8a1Q00780 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC11.61□□□□□ -0.55
Col8a1Q00780 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC11.61□□□□□ -0.55
Col8a1Q00780 Gm27320-201ENSMUST00000184892 109 ntBASIC11.61□□□□□ -0.55
Col8a1Q00780 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Col8a1Q00780 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC11.61□□□□□ -0.55
Col8a1Q00780 Gm18473-201ENSMUST00000220543 868 ntBASIC11.61□□□□□ -0.55
Col8a1Q00780 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms