Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox3P53784 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
Sox3P53784 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC13.09□□□□□ -0.31
Sox3P53784 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC13.09□□□□□ -0.31
Sox3P53784 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox3P53784 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox3P53784 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox3P53784 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox3P53784 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox3P53784 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Sox3P53784 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox3P53784 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Sox3P53784 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC13.09□□□□□ -0.31
Sox3P53784 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Sox3P53784 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox3P53784 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox3P53784 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Sox3P53784 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
Sox3P53784 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC13.08□□□□□ -0.31
Sox3P53784 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
Sox3P53784 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC13.08□□□□□ -0.32
Sox3P53784 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC13.08□□□□□ -0.32
Sox3P53784 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Sox3P53784 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Sox3P53784 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Sox3P53784 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC13.08□□□□□ -0.32
Sox3P53784 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC13.08□□□□□ -0.32
Sox3P53784 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Sox3P53784 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Sox3P53784 Gm38230-201ENSMUST00000193572 1159 ntBASIC13.08□□□□□ -0.32
Sox3P53784 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC13.08□□□□□ -0.32
Sox3P53784 Gm7619-201ENSMUST00000210649 1282 ntBASIC13.08□□□□□ -0.32
Sox3P53784 AC139580.1-202ENSMUST00000223574 928 ntBASIC13.08□□□□□ -0.32
Sox3P53784 CT485787.1-201ENSMUST00000225617 968 ntBASIC13.08□□□□□ -0.32
Sox3P53784 AC154846.1-201ENSMUST00000226278 862 ntBASIC13.08□□□□□ -0.32
Sox3P53784 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Sox3P53784 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC13.08□□□□□ -0.32
Sox3P53784 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC13.08□□□□□ -0.32
Sox3P53784 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
Sox3P53784 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox3P53784 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Gm18222-201ENSMUST00000202416 1387 ntBASIC13.07□□□□□ -0.32
Sox3P53784 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Sox3P53784 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Sox3P53784 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Sox3P53784 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Sox3P53784 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC13.07□□□□□ -0.32
Sox3P53784 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Gm12585-201ENSMUST00000117307 290 ntBASIC13.07□□□□□ -0.32
Sox3P53784 Mup-ps23-201ENSMUST00000118063 630 ntBASIC13.07□□□□□ -0.32
Sox3P53784 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC13.07□□□□□ -0.32
Sox3P53784 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC13.07□□□□□ -0.32
Sox3P53784 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 AC110817.1-201ENSMUST00000225706 605 ntBASIC13.07□□□□□ -0.32
Sox3P53784 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Sox3P53784 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC13.07□□□□□ -0.32
Sox3P53784 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC13.07□□□□□ -0.32
Sox3P53784 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC13.07□□□□□ -0.32
Sox3P53784 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
Sox3P53784 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Sox3P53784 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Sox3P53784 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
Sox3P53784 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sox3P53784 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms