Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp4P35123 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp4P35123 Gm2810-201ENSMUST00000118681 990 ntBASIC14.32□□□□□ -0.12
Usp4P35123 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC14.32□□□□□ -0.12
Usp4P35123 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
Usp4P35123 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC14.32□□□□□ -0.12
Usp4P35123 Gm38225-201ENSMUST00000194001 393 ntBASIC14.32□□□□□ -0.12
Usp4P35123 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC14.32□□□□□ -0.12
Usp4P35123 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp4P35123 Arhgef33-209ENSMUST00000225223 714 ntBASIC14.32□□□□□ -0.12
Usp4P35123 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp4P35123 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Usp4P35123 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp4P35123 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Usp4P35123 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC14.32□□□□□ -0.12
Usp4P35123 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp4P35123 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp4P35123 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp4P35123 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp4P35123 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp4P35123 Ntrk2-204ENSMUST00000224259 3049 ntBASIC14.32□□□□□ -0.12
Usp4P35123 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Usp4P35123 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Usp4P35123 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC14.32□□□□□ -0.12
Usp4P35123 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Usp4P35123 Gm13517-201ENSMUST00000120782 1495 ntBASIC14.31□□□□□ -0.12
Usp4P35123 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC14.31□□□□□ -0.12
Usp4P35123 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Gm43423-201ENSMUST00000198390 2094 ntBASIC14.31□□□□□ -0.12
Usp4P35123 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC14.31□□□□□ -0.12
Usp4P35123 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC14.31□□□□□ -0.12
Usp4P35123 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC14.31□□□□□ -0.12
Usp4P35123 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Usp4P35123 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC14.31□□□□□ -0.12
Usp4P35123 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC14.31□□□□□ -0.12
Usp4P35123 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Gm5626-201ENSMUST00000222151 1058 ntBASIC14.31□□□□□ -0.12
Usp4P35123 CT025535.1-201ENSMUST00000227172 491 ntBASIC14.31□□□□□ -0.12
Usp4P35123 AC121598.1-201ENSMUST00000228224 1019 ntBASIC14.31□□□□□ -0.12
Usp4P35123 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
Usp4P35123 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Usp4P35123 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC14.31□□□□□ -0.12
Usp4P35123 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp4P35123 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp4P35123 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp4P35123 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp4P35123 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp4P35123 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC14.3□□□□□ -0.12
Usp4P35123 Gm27194-201ENSMUST00000175753 2936 ntBASIC14.3□□□□□ -0.12
Usp4P35123 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Usp4P35123 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp4P35123 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp4P35123 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Usp4P35123 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
Usp4P35123 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp4P35123 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC14.3□□□□□ -0.12
Usp4P35123 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Usp4P35123 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Usp4P35123 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Usp4P35123 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC14.3□□□□□ -0.12
Usp4P35123 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp4P35123 Gm12428-201ENSMUST00000119844 727 ntBASIC14.3□□□□□ -0.12
Usp4P35123 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Usp4P35123 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Usp4P35123 Gm44719-201ENSMUST00000206404 149 ntBASIC14.3□□□□□ -0.12
Usp4P35123 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp4P35123 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp4P35123 Gm8775-201ENSMUST00000170943 1327 ntBASIC14.3□□□□□ -0.12
Usp4P35123 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Usp4P35123 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp4P35123 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp4P35123 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp4P35123 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp4P35123 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Usp4P35123 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp4P35123 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC14.29□□□□□ -0.12
Usp4P35123 Zkscan14-203ENSMUST00000198959 2243 ntBASIC14.29□□□□□ -0.12
Usp4P35123 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms