Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col2a1P28481 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col2a1P28481 Gm28182-201ENSMUST00000188354 2477 ntBASIC15.27■□□□□ 0.04
Col2a1P28481 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col2a1P28481 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col2a1P28481 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col2a1P28481 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Col2a1P28481 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col2a1P28481 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col2a1P28481 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col2a1P28481 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col2a1P28481 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col2a1P28481 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col2a1P28481 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC15.27■□□□□ 0.04
Col2a1P28481 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col2a1P28481 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col2a1P28481 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col2a1P28481 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
Col2a1P28481 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Col2a1P28481 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC15.27■□□□□ 0.03
Col2a1P28481 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col2a1P28481 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Col2a1P28481 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC15.27■□□□□ 0.03
Col2a1P28481 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col2a1P28481 n-R5s77-201ENSMUST00000083757 119 ntBASIC15.27■□□□□ 0.03
Col2a1P28481 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col2a1P28481 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col2a1P28481 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col2a1P28481 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col2a1P28481 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col2a1P28481 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col2a1P28481 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Col2a1P28481 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col2a1P28481 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col2a1P28481 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col2a1P28481 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col2a1P28481 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col2a1P28481 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col2a1P28481 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC15.26■□□□□ 0.03
Col2a1P28481 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col2a1P28481 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col2a1P28481 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col2a1P28481 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Col2a1P28481 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
Col2a1P28481 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC15.26■□□□□ 0.03
Col2a1P28481 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC15.26■□□□□ 0.03
Col2a1P28481 Cts7-204ENSMUST00000225321 1257 ntBASIC15.26■□□□□ 0.03
Col2a1P28481 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Col2a1P28481 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Col2a1P28481 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col2a1P28481 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col2a1P28481 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
Col2a1P28481 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col2a1P28481 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col2a1P28481 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
Col2a1P28481 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC15.25■□□□□ 0.03
Col2a1P28481 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Col2a1P28481 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col2a1P28481 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col2a1P28481 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC15.25■□□□□ 0.03
Col2a1P28481 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col2a1P28481 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col2a1P28481 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Col2a1P28481 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC15.25■□□□□ 0.03
Col2a1P28481 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col2a1P28481 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col2a1P28481 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC15.25■□□□□ 0.03
Col2a1P28481 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC15.25■□□□□ 0.03
Col2a1P28481 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col2a1P28481 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC15.25■□□□□ 0.03
Col2a1P28481 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col2a1P28481 Gm38266-201ENSMUST00000194931 421 ntBASIC15.25■□□□□ 0.03
Col2a1P28481 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC15.25■□□□□ 0.03
Col2a1P28481 Gm43758-201ENSMUST00000199500 367 ntBASIC15.25■□□□□ 0.03
Col2a1P28481 Ighv8-10-201ENSMUST00000199579 358 ntBASIC15.25■□□□□ 0.03
Col2a1P28481 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC15.25■□□□□ 0.03
Col2a1P28481 AC166051.1-201ENSMUST00000214313 210 ntBASIC15.25■□□□□ 0.03
Col2a1P28481 AC154171.1-201ENSMUST00000224610 643 ntBASIC15.25■□□□□ 0.03
Col2a1P28481 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
Col2a1P28481 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col2a1P28481 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Col2a1P28481 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col2a1P28481 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col2a1P28481 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col2a1P28481 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC15.24■□□□□ 0.03
Col2a1P28481 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col2a1P28481 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col2a1P28481 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col2a1P28481 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col2a1P28481 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Col2a1P28481 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col2a1P28481 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col2a1P28481 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col2a1P28481 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col2a1P28481 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col2a1P28481 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC15.24■□□□□ 0.03
Col2a1P28481 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col2a1P28481 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC15.24■□□□□ 0.03
Col2a1P28481 Gm18584-201ENSMUST00000203098 964 ntBASIC15.24■□□□□ 0.03
Col2a1P28481 Gm4782-201ENSMUST00000168705 2046 ntBASIC15.24■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms