Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Msx1P13297 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Msx1P13297 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
Msx1P13297 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC13.01□□□□□ -0.33
Msx1P13297 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Gm9347-201ENSMUST00000211473 1607 ntBASIC13.01□□□□□ -0.33
Msx1P13297 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Msx1P13297 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
Msx1P13297 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC13□□□□□ -0.33
Msx1P13297 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC13□□□□□ -0.33
Msx1P13297 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC13□□□□□ -0.33
Msx1P13297 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC13□□□□□ -0.33
Msx1P13297 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Gm42471-201ENSMUST00000201457 1865 ntBASIC13□□□□□ -0.33
Msx1P13297 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC13□□□□□ -0.33
Msx1P13297 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC13□□□□□ -0.33
Msx1P13297 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Gm15460-201ENSMUST00000118147 391 ntBASIC13□□□□□ -0.33
Msx1P13297 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC13□□□□□ -0.33
Msx1P13297 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC13□□□□□ -0.33
Msx1P13297 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC13□□□□□ -0.33
Msx1P13297 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC13□□□□□ -0.33
Msx1P13297 Gm26871-204ENSMUST00000181310 523 ntTSL 3 BASIC13□□□□□ -0.33
Msx1P13297 Mir7654-201ENSMUST00000185082 70 ntBASIC13□□□□□ -0.33
Msx1P13297 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC13□□□□□ -0.33
Msx1P13297 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC13□□□□□ -0.33
Msx1P13297 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC13□□□□□ -0.33
Msx1P13297 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Msx1P13297 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC13□□□□□ -0.33
Msx1P13297 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Gm43056-201ENSMUST00000197865 2791 ntBASIC12.99□□□□□ -0.33
Msx1P13297 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC12.99□□□□□ -0.33
Msx1P13297 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Gm18595-201ENSMUST00000175736 1068 ntBASIC12.99□□□□□ -0.33
Msx1P13297 Gm27839-201ENSMUST00000184242 106 ntBASIC12.99□□□□□ -0.33
Msx1P13297 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC12.99□□□□□ -0.33
Msx1P13297 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Msx1P13297 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Gm44387-201ENSMUST00000196298 145 ntBASIC12.99□□□□□ -0.33
Msx1P13297 Gm17794-201ENSMUST00000220252 955 ntBASIC12.99□□□□□ -0.33
Msx1P13297 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC12.99□□□□□ -0.33
Msx1P13297 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC12.99□□□□□ -0.33
Msx1P13297 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx1P13297 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Msx1P13297 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms