Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Hmgb3O54879 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 AC126549.2-201ENSMUST00000223997 1976 ntBASIC11.28□□□□□ -0.6
Hmgb3O54879 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Gm45638-201ENSMUST00000211507 2878 ntBASIC11.28□□□□□ -0.6
Hmgb3O54879 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC11.28□□□□□ -0.6
Hmgb3O54879 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC11.28□□□□□ -0.6
Hmgb3O54879 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Hmgb3O54879 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC11.28□□□□□ -0.6
Hmgb3O54879 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Hmgb3O54879 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC11.28□□□□□ -0.6
Hmgb3O54879 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC11.28□□□□□ -0.6
Hmgb3O54879 Gm43347-201ENSMUST00000200226 580 ntBASIC11.28□□□□□ -0.6
Hmgb3O54879 Gm18669-201ENSMUST00000216049 778 ntBASIC11.28□□□□□ -0.6
Hmgb3O54879 AC154595.3-201ENSMUST00000224579 384 ntBASIC11.28□□□□□ -0.6
Hmgb3O54879 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Hmgb3O54879 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Hmgb3O54879 Nwd1-201ENSMUST00000093427 7840 ntTSL 5 BASIC11.28□□□□□ -0.6
Hmgb3O54879 Gm5763-201ENSMUST00000155951 1530 ntBASIC11.28□□□□□ -0.6
Hmgb3O54879 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hmgb3O54879 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Hmgb3O54879 Gm9347-201ENSMUST00000211473 1607 ntBASIC11.27□□□□□ -0.6
Hmgb3O54879 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC11.27□□□□□ -0.6
Hmgb3O54879 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Hmgb3O54879 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Hmgb3O54879 Plin4-201ENSMUST00000002908 5755 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.6
Hmgb3O54879 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC11.27□□□□□ -0.6
Hmgb3O54879 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Hmgb3O54879 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Hmgb3O54879 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC11.27□□□□□ -0.6
Hmgb3O54879 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hmgb3O54879 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hmgb3O54879 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hmgb3O54879 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hmgb3O54879 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hmgb3O54879 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Hmgb3O54879 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hmgb3O54879 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Hmgb3O54879 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Hmgb3O54879 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Hmgb3O54879 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC11.27□□□□□ -0.61
Hmgb3O54879 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC11.27□□□□□ -0.61
Hmgb3O54879 Gm16026-204ENSMUST00000162652 683 ntBASIC11.27□□□□□ -0.61
Hmgb3O54879 Gm7230-201ENSMUST00000173026 815 ntBASIC11.27□□□□□ -0.61
Hmgb3O54879 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC11.27□□□□□ -0.61
Hmgb3O54879 Gm18041-201ENSMUST00000218210 618 ntBASIC11.27□□□□□ -0.61
Hmgb3O54879 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hmgb3O54879 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC11.27□□□□□ -0.61
Hmgb3O54879 Tox4-201ENSMUST00000022766 5350 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Hmgb3O54879 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hmgb3O54879 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Hmgb3O54879 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
Hmgb3O54879 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hmgb3O54879 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hmgb3O54879 Agrn-202ENSMUST00000105574 7193 ntTSL 5 BASIC11.27□□□□□ -0.61
Hmgb3O54879 Gm10545-201ENSMUST00000097612 4969 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Hmgb3O54879 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hmgb3O54879 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Hmgb3O54879 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hmgb3O54879 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Hmgb3O54879 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Hmgb3O54879 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 5330417C22Rik-202ENSMUST00000106625 5836 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Hmgb3O54879 Gm21986-201ENSMUST00000113671 5560 ntTSL 2 BASIC11.26□□□□□ -0.61
Hmgb3O54879 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Hmgb3O54879 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Hmgb3O54879 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 169.3 ms