Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Scn11aQ9R053 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Scn11aQ9R053 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Scn11aQ9R053 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Scn11aQ9R053 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Scn11aQ9R053 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC15.92■□□□□ 0.14
Scn11aQ9R053 Gm7118-201ENSMUST00000200167 1003 ntBASIC15.92■□□□□ 0.14
Scn11aQ9R053 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC15.92■□□□□ 0.14
Scn11aQ9R053 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Gm43056-201ENSMUST00000197865 2791 ntBASIC15.92■□□□□ 0.14
Scn11aQ9R053 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Gm24514-201ENSMUST00000174961 285 ntBASIC15.92■□□□□ 0.14
Scn11aQ9R053 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Scn11aQ9R053 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Gm4768-201ENSMUST00000206199 686 ntBASIC15.92■□□□□ 0.14
Scn11aQ9R053 Gm9368-201ENSMUST00000219348 831 ntBASIC15.92■□□□□ 0.14
Scn11aQ9R053 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Scn11aQ9R053 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC15.92■□□□□ 0.14
Scn11aQ9R053 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Scn11aQ9R053 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Gm14704-201ENSMUST00000120300 874 ntBASIC15.91■□□□□ 0.14
Scn11aQ9R053 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Gm16379-201ENSMUST00000161469 348 ntBASIC15.91■□□□□ 0.14
Scn11aQ9R053 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Gm8762-201ENSMUST00000193486 339 ntBASIC15.91■□□□□ 0.14
Scn11aQ9R053 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC15.91■□□□□ 0.14
Scn11aQ9R053 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Scn11aQ9R053 Gm9333-201ENSMUST00000205452 1323 ntBASIC15.9■□□□□ 0.14
Scn11aQ9R053 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Scn11aQ9R053 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Scn11aQ9R053 Gm16505-201ENSMUST00000179981 232 ntBASIC15.9■□□□□ 0.14
Scn11aQ9R053 Mir6979-201ENSMUST00000183927 56 ntBASIC15.9■□□□□ 0.14
Scn11aQ9R053 Gm37986-201ENSMUST00000193285 383 ntBASIC15.9■□□□□ 0.14
Scn11aQ9R053 CT030182.1-201ENSMUST00000225935 533 ntBASIC15.9■□□□□ 0.14
Scn11aQ9R053 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Scn11aQ9R053 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Scn11aQ9R053 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC15.9■□□□□ 0.14
Scn11aQ9R053 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Scn11aQ9R053 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
Scn11aQ9R053 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Scn11aQ9R053 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Scn11aQ9R053 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Scn11aQ9R053 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Scn11aQ9R053 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Scn11aQ9R053 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Scn11aQ9R053 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Scn11aQ9R053 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Scn11aQ9R053 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Scn11aQ9R053 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC15.9■□□□□ 0.14
Scn11aQ9R053 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC15.9■□□□□ 0.14
Scn11aQ9R053 Gm5781-201ENSMUST00000219792 443 ntBASIC15.9■□□□□ 0.14
Scn11aQ9R053 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Scn11aQ9R053 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Scn11aQ9R053 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Scn11aQ9R053 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms