Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdc40Q9DC48 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Gm43056-201ENSMUST00000197865 2791 ntBASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 AC166491.1-201ENSMUST00000227053 2308 ntBASIC12.71□□□□□ -0.37
Cdc40Q9DC48 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Gm22189-201ENSMUST00000103822 86 ntBASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Gm12585-201ENSMUST00000117307 290 ntBASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Gm11478-201ENSMUST00000117851 599 ntBASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Gm18018-201ENSMUST00000198273 408 ntBASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Gm45059-201ENSMUST00000205558 1077 ntBASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Gm45384-201ENSMUST00000210451 277 ntBASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Gm18027-201ENSMUST00000218947 619 ntBASIC12.71□□□□□ -0.37
Cdc40Q9DC48 AC132467.2-202ENSMUST00000227726 559 ntBASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdc40Q9DC48 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
Cdc40Q9DC48 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
Cdc40Q9DC48 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Cdc40Q9DC48 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Cdc40Q9DC48 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Cdc40Q9DC48 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Cdc40Q9DC48 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Cdc40Q9DC48 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Cdc40Q9DC48 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Gm12138-201ENSMUST00000122180 951 ntBASIC12.7□□□□□ -0.38
Cdc40Q9DC48 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Ighv5-13-201ENSMUST00000193550 290 ntBASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Gm9908-201ENSMUST00000211534 448 ntBASIC12.7□□□□□ -0.38
Cdc40Q9DC48 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Gm15823-201ENSMUST00000064305 670 ntBASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Cdc40Q9DC48 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 50.1 ms