Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm29667-201ENSMUST00000190817 490 ntBASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Gm6263-201ENSMUST00000120029 1342 ntBASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Gm14719-201ENSMUST00000121891 340 ntBASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Gm21854-201ENSMUST00000179901 471 ntBASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 AC132863.2-201ENSMUST00000226643 799 ntBASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx56Q9D0R4 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Gm37015-201ENSMUST00000192763 1521 ntBASIC14.36□□□□□ -0.11
Ddx56Q9D0R4 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Gm15770-201ENSMUST00000117498 584 ntBASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 63.2 ms